RNA id: TU86481


Basic Information

Item Value
RNA id TU86481
length 1920
lncRNA type antisense_over
GC content 0.55
exon number 11
gene id G75796
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 10714098 ~ 10764080 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCTTATCATACCACATTTTCACCGACAGCTGTCCAGGCAGTAGCTGAGGGGCATCTCTAAGACCACTTGGGCTAGATGGGGACAGGACAGATATAGATGGTCTTTCCATCTTCTGTGATTCAAAAGAACTTGAACCTGTAGATTCTAATGGAGGATGTGATGTTTCTGGTATTCGTGGTATATCACCAATTGGCCTTGATACTACTAATTCAACTTTTGGTTCTGTTTGAGAATTCAAGATGATATTGTAAACTTCTTTCTTGGTTAATCCTGGTAATGATTTACCATTCCACTGAAGCACTTCATCACCGGCCCGTAGATGACCCACCACATCAGCTAGACTTCCTTTCTTGACTTTGGTGATGAAGGCCCCAAGTCTCCCAGTTTCTGTAATCTTCCCCCCAACCACCTTTAGCCCCAGCAGAGCCCCAGCCTCTTTTGGCATGGCTGTTCGCTTGCTCAAAGTGATTCGGCCAATTAAATGATCACCTTCCTTGGAGGGCTGCCATGTAACCGGATGATGCCATGCGGTGGGGTCCAGTGGACAGCACTCCCAGTCCCCTCTCTCGCTGACGCTCTCGATCTCCACATCTTCACAGCTGGTGTACTCCGGTGTCGAACCAGCCTCTTCCTCCGAGCTGCTGACGGACATCTGTCTCTTGTTGCCGCCCCGTTTGCTCTTGTACGGACGGGGCGGGGGCGGTCGTAGAGACTCCGATTGGTCAGAGCTGAGCGAATCGTTGCGCAGCATGCTCTCTGCTTTTTGTCGTTTCGATTTGCGCAGTAGTGCAGCCGAGCCAGGGTCCAAGTGGCTCGGCTGCAACTTCCTGTCCCATTCCTGAGGCTCTCTAAGTTCAGGGGGGCCTGCGGGCATGGCAGGACCCACCCTGAACCCCGGAGCTGGCGGCTGTGGGGTGTGGTTCGTTTTAGCGGGAGGACCCTGCATAGCCGGTGCACCCTGCAAACCTGTACCCCCCGCGGTCCTCTCTGGCACGTAGGCCTGCTGCTGCCCCTCCAGCGAGGTCTGCCGCCCATCTGCCCATCTCCGTGCACCTCTGTTGTCCTGCACCATCTCTCCTGCTTCCCTCACCTTAGGCTGCATTCGTCCATCAGGCTCCGCTGGCCGGAGTTTGGCCGGATGATGTGGAGCATTTGGGTCAGTCCTGCACTGTTCCCTGGGTGATTTCTGCTCTCCCTCAGTCCTTCTAGTCTCAGGACTGTCGTGTTCCTGAGAGCGAGTCTTCATCAGTCTTCGACTTTCTCTCCGATTTTCTCCGGACTCTCGCTCTTCGGAACCCTGGGACTGGATTCTAGATAGCCCTCGCCGCCTCTCTCCTCTTGGCCCTGGCTTGCCATTCTGATCAGAGGCTGCTGGTGGCTTTTTTCTATCTTGTGGAGGCTCACTGCGTGAGCGCGATGACAGCGTGTCAGCTGACCCTGTAGAGGAGCCTTTTCTGGGGTCGGTTGGGGCAGGTGGCTGGGCGTCATGGGCAGTAGAAACGGAGGAGTTAAGAGGGTTCTGAGACCTAGAGCGCAACTTCTTCTCTCCAACGGGGTCTCCACACATGGCTGGTTCACTCACTGCTGACCCCAGCTCTCCAGGCTTGGGCCCATGGCTGGGAAACCATTCTCCTGATTTAGTGAGTATATCCTGTTGCCTTCGGCACTGGTTACATACCCACATTACCACTTTGTCCTCCTTGTTATTGGAACGCAGAGAGACCCTTCCCCCGCACCGGGCACAGAACTTAGTCTGGCAGTAGGAGCACAGGTTTCCGCAGCCATCAGCAAACTTGGTCTTGTGGCAGATGCCACAGGTGGGGGCGTCATCCTTGTGTTGGCCCTGCTGCCTCTGTTGGGGGGGCTCCGGCCCAATCCGCCTCACCTGCTCCTTGTAGTTGGCAACTTGCTGGTGCAAAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86287 lncRNA downstream 32938 10687849 ~ 10703783 (-) False G75609
TU86285 lncRNA downstream 38571 10696564 ~ 10696675 (-) True G75609
TU86431 lncRNA downstream 185501 10550070 ~ 10551220 (-) True G75751
TU86247 lncRNA downstream 235645 10490985 ~ 10501076 (-) True G75601
TU86357 lncRNA downstream 373533 10357341 ~ 10363188 (-) True CI01000012_10358145_10364166
TU86273 lncRNA upstream 83 10764163 ~ 10791209 (-) True G75607
TU86503 lncRNA upstream 32340 10796420 ~ 10796654 (-) True G75814
TU86565 lncRNA upstream 156141 10920221 ~ 10922346 (-) True G75875
TU86590 lncRNA upstream 158642 10922722 ~ 10927672 (-) True G75892
TU86630 lncRNA upstream 355440 11119520 ~ 11119825 (-) True G75931
CI01000012_10705713_10710443.mRNA mRNA downstream 26278 10705713 ~ 10710443 (-) True CI01000012_10705713_10710443
CI01000012_10696109_10703071.mRNA mRNA downstream 33535 10695756 ~ 10703186 (-) False CI01000012_10696109_10703071
CI01000012_10639383_10640319.mRNA mRNA downstream 95873 10639161 ~ 10640848 (-) True CI01000012_10639383_10640319
CI01000012_10626417_10638842.mRNA mRNA downstream 97758 10625889 ~ 10638963 (-) True CI01000012_10626417_10638842
CI01000012_10395715_10408849.mRNA mRNA downstream 327872 10395628 ~ 10408849 (-) True CI01000012_10395715_10408849
CI01000012_10799203_10801485.mRNA mRNA upstream 34698 10798778 ~ 10801537 (-) True CI01000012_10799203_10801485
CI01000012_10837437_10841732.mRNA mRNA upstream 73335 10837415 ~ 10841804 (-) True CI01000012_10837437_10841732
CI01000012_10934571_10937915.mRNA mRNA upstream 170419 10934499 ~ 10937915 (-) True CI01000012_10934571_10937915
CI01000012_10939589_10944243.mRNA mRNA upstream 174875 10938955 ~ 10944243 (-) True CI01000012_10939589_10944243
CI01000012_10947838_10952009.mRNA mRNA upstream 183758 10947838 ~ 10952009 (-) True CI01000012_10947838_10952009
TU86281 other downstream 115850 10611915 ~ 10620871 (-) False G75608
TU86282 other downstream 115850 10611915 ~ 10620871 (-) True G75608
TU85530 other downstream 1160749 9575648 ~ 9575972 (-) False G74982
TU85525 other downstream 1160797 9575648 ~ 9575924 (-) False G74982
TU85327 other downstream 1334753 9398076 ~ 9401968 (-) True CI01000012_09400481_09401810
TU87807 other upstream 1284964 12049044 ~ 12049222 (-) True G76984
TU87842 other upstream 1314856 12080546 ~ 12080752 (-) False G77017
TU87843 other upstream 1314856 12080546 ~ 12083845 (-) True G77017
TU87800 other upstream 2190366 12954446 ~ 12955664 (-) True CI01000012_12954694_12954954
TU88148 other upstream 2855196 13619276 ~ 13633819 (-) True G77287

Expression Profile