RNA id: TU86503


Basic Information

Item Value
RNA id TU86503
length 235
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G75814
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 10796420 ~ 10796654 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTTTGCAATCAATCTCCCATATACAATGATGTGTCCAACTGTACTGTTAAAATTGATATATGCCATACAAAGTGCAGTCTTGTGCAGTTTCAATCACTGTCATAAAAACTGTAGCCATAGTTTACATCTGAAATATTCATCACTGTTATATTGACAACATGGCTAAGCATTTTGACTATCTTGTTCGAGAACAATGACACAAGGACTTGTCATTCTGATGGCACTGATATGTTC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86273 lncRNA downstream 5211 10764163 ~ 10791209 (-) True G75607
TU86482 lncRNA downstream 32340 10714098 ~ 10764080 (-) False G75796
TU86481 lncRNA downstream 32340 10736721 ~ 10764080 (-) True G75796
TU86287 lncRNA downstream 92637 10687849 ~ 10703783 (-) False G75609
TU86285 lncRNA downstream 98270 10696564 ~ 10696675 (-) True G75609
TU86565 lncRNA upstream 123567 10920221 ~ 10922346 (-) True G75875
TU86590 lncRNA upstream 126068 10922722 ~ 10927672 (-) True G75892
TU86630 lncRNA upstream 322866 11119520 ~ 11119825 (-) True G75931
TU86631 lncRNA upstream 323289 11119943 ~ 11121104 (-) True G75932
TU86632 lncRNA upstream 324650 11121304 ~ 11121901 (-) True G75933
CI01000012_10705713_10710443.mRNA mRNA downstream 85977 10705713 ~ 10710443 (-) True CI01000012_10705713_10710443
CI01000012_10696109_10703071.mRNA mRNA downstream 93234 10695756 ~ 10703186 (-) False CI01000012_10696109_10703071
CI01000012_10639383_10640319.mRNA mRNA downstream 155572 10639161 ~ 10640848 (-) True CI01000012_10639383_10640319
CI01000012_10626417_10638842.mRNA mRNA downstream 157457 10625889 ~ 10638963 (-) True CI01000012_10626417_10638842
CI01000012_10395715_10408849.mRNA mRNA downstream 387571 10395628 ~ 10408849 (-) True CI01000012_10395715_10408849
CI01000012_10799203_10801485.mRNA mRNA upstream 2124 10798778 ~ 10801537 (-) True CI01000012_10799203_10801485
CI01000012_10837437_10841732.mRNA mRNA upstream 40761 10837415 ~ 10841804 (-) True CI01000012_10837437_10841732
CI01000012_10934571_10937915.mRNA mRNA upstream 137845 10934499 ~ 10937915 (-) True CI01000012_10934571_10937915
CI01000012_10939589_10944243.mRNA mRNA upstream 142301 10938955 ~ 10944243 (-) True CI01000012_10939589_10944243
CI01000012_10947838_10952009.mRNA mRNA upstream 151184 10947838 ~ 10952009 (-) True CI01000012_10947838_10952009
TU86281 other downstream 175549 10611915 ~ 10620871 (-) False G75608
TU86282 other downstream 175549 10611915 ~ 10620871 (-) True G75608
TU85530 other downstream 1220448 9575648 ~ 9575972 (-) False G74982
TU85525 other downstream 1220496 9575648 ~ 9575924 (-) False G74982
TU85327 other downstream 1394452 9398076 ~ 9401968 (-) True CI01000012_09400481_09401810
TU87807 other upstream 1252390 12049044 ~ 12049222 (-) True G76984
TU87842 other upstream 1282282 12080546 ~ 12080752 (-) False G77017
TU87843 other upstream 1282282 12080546 ~ 12083845 (-) True G77017
TU87800 other upstream 2157792 12954446 ~ 12955664 (-) True CI01000012_12954694_12954954
TU88148 other upstream 2822622 13619276 ~ 13633819 (-) True G77287

Expression Profile