RNA id: TU86632


Basic Information

Item Value
RNA id TU86632
length 598
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G75933
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 11121304 ~ 11121901 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTGTTCCGAAGATTAACGAAGGTCTTACAGGTGTGGAACGCCAGGAGGGTGAGTAATAAATGACAGAATTTTCATTTTTGGGTGAACTAACATTTTAATAGTAAATATGTGTTCCCCATACTGAAGTGTTACCATATTTTTACATATGAAGCAATTTTTTAGGGTACCCTACAAGCTATTTTGTTTTTACAGTGTAGTGAGACAAAAACAGGTCTGATAAGTGACTGCCATTACAGTAGGGTGTTGTGTGTGGTTACCAAGGCGTTGCTAGGGTGTTCTGCGTGGTTGATATGTGGTCACTTTTACCTGAGTCAAAAGTGCTACACCCAAGTCTCTACGATACTGTGGTCCCTCAGGTCCTTCATTCAATGTAAAGTTGTCGTCACATTAGTGAAATTTCTGCAAAGGTTCATTGTCCATTGTCAATAGTATTGCGATGTATGAAGCACAACTCATTTTCAAGCCAAGCAGTGTTCCATTGGTCAACATGGAGAGTTTGCATGACCAACTTGAACCTGTTGCGAAATCTGCTGTGGGGAATTCCCGATTGTGTGAATTCCTATTGAAATAACACCATTTCACCTGTAAAAAATGACCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86631 lncRNA downstream 200 11119943 ~ 11121104 (-) True G75932
TU86630 lncRNA downstream 1479 11119520 ~ 11119825 (-) True G75931
TU86590 lncRNA downstream 193632 10922722 ~ 10927672 (-) True G75892
TU86565 lncRNA downstream 198958 10920221 ~ 10922346 (-) True G75875
TU86503 lncRNA downstream 324650 10796420 ~ 10796654 (-) True G75814
TU86643 lncRNA upstream 13087 11134988 ~ 11135220 (-) True G75944
TU86654 lncRNA upstream 28448 11150349 ~ 11150578 (-) True G75955
TU86655 lncRNA upstream 28961 11150862 ~ 11151189 (-) True G75956
TU86657 lncRNA upstream 30720 11152621 ~ 11152958 (-) True G75958
TU86661 lncRNA upstream 32787 11154688 ~ 11155045 (-) False G75961
CI01000012_11088423_11089301.mRNA mRNA downstream 31112 11088141 ~ 11090192 (-) True CI01000012_11088423_11089301
CI01000012_11068977_11070913.mRNA mRNA downstream 49975 11068861 ~ 11071329 (-) True CI01000012_11068977_11070913
CI01000012_11047566_11050458.mRNA mRNA downstream 68892 11047388 ~ 11052412 (-) True CI01000012_11047566_11050458
CI01000012_11000305_11008211.mRNA mRNA downstream 111467 10999678 ~ 11009837 (-) True CI01000012_11000305_11008211
CI01000012_10993043_10996095.mRNA mRNA downstream 125209 10992471 ~ 10996095 (-) True CI01000012_10993043_10996095
CI01000012_11292683_11315522.mRNA mRNA upstream 170782 11292683 ~ 11316018 (-) True CI01000012_11292683_11315522
CI01000012_11585774_11608639.mRNA mRNA upstream 463727 11585628 ~ 11608975 (-) True CI01000012_11585774_11608639
CI01000012_11799629_11846842.mRNA mRNA upstream 677728 11799629 ~ 11846842 (-) True CI01000012_11799629_11846842
CI01000012_11905259_11905909.mRNA mRNA upstream 783255 11905156 ~ 11906244 (-) True CI01000012_11905259_11905909
CI01000012_11925364_11925971.mRNA mRNA upstream 803098 11924999 ~ 11925971 (-) True CI01000012_11925364_11925971
TU86281 other downstream 500433 10611915 ~ 10620871 (-) False G75608
TU86282 other downstream 500433 10611915 ~ 10620871 (-) True G75608
TU85530 other downstream 1545332 9575648 ~ 9575972 (-) False G74982
TU85525 other downstream 1545380 9575648 ~ 9575924 (-) False G74982
TU85327 other downstream 1719336 9398076 ~ 9401968 (-) True CI01000012_09400481_09401810
TU87807 other upstream 927143 12049044 ~ 12049222 (-) True G76984
TU87842 other upstream 957035 12080546 ~ 12080752 (-) False G77017
TU87843 other upstream 957035 12080546 ~ 12083845 (-) True G77017
TU87800 other upstream 1832545 12954446 ~ 12955664 (-) True CI01000012_12954694_12954954
TU88148 other upstream 2497375 13619276 ~ 13633819 (-) True G77287

Expression Profile