RNA id: TU86190


Basic Information

Item Value
RNA id TU86190
length 288
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G75566
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 11154771 ~ 11155058 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CACCGGTGTAACGTGTGTCTCTCGTGTATGCGTGGCGAATCACAGGGAAAGCACAAGCCTATCCAAATGCTTTATGCTGAAAATCGCGATTCATGTCTGCTCACTTTAATAACTCCATAAACCCGTTTGCTTTATGAGACGAGCCCAAAAAGCTTATAATGAGTGACCATGGCAACACAGAATGAGTGCCGCGCTGTGTGAAACTGGCTATACAAGCATAAACAAAACACAACGCCTCCGTCGACTGTGTTAGTGTGTTTAGTTAAATTGCTGAAAATAATGAGTGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86187 lncRNA upstream 2387 11152059 ~ 11152384 (+) True G75563
TU86178 lncRNA upstream 19166 11135373 ~ 11135605 (+) True G75554
TU86176 lncRNA upstream 21082 11133368 ~ 11133689 (+) True G75552
TU86131 lncRNA upstream 110101 11042467 ~ 11043099 (+) True G75517
TU86017 lncRNA upstream 207285 10943450 ~ 10947486 (+) True G75404
TU86195 lncRNA downstream 7170 11162228 ~ 11162545 (+) True G75571
TU86202 lncRNA downstream 13495 11168553 ~ 11168781 (+) True G75578
TU86207 lncRNA downstream 19429 11174487 ~ 11174715 (+) True G75583
TU86212 lncRNA downstream 30003 11185061 ~ 11185287 (+) True G75588
TU86724 lncRNA downstream 96759 11251817 ~ 11252102 (+) True G76018
CI01000012_11091957_11093675.mRNA mRNA upstream 60997 11091957 ~ 11093774 (+) True CI01000012_11091957_11093675
CI01000012_11043669_11044569.mRNA mRNA upstream 110130 11043627 ~ 11044641 (+) False CI01000012_11043669_11044569
CI01000012_11011437_11013922.mRNA mRNA upstream 140840 11011364 ~ 11013931 (+) True CI01000012_11011437_11013922
CI01000012_10922409_10930704.mRNA mRNA upstream 223486 10922409 ~ 10931285 (+) True CI01000012_10922409_10930704
CI01000012_10892631_10918617.mRNA mRNA upstream 236154 10892631 ~ 10918617 (+) True CI01000012_10892631_10918617
CI01000012_11277561_11292490.mRNA mRNA downstream 122503 11277561 ~ 11292636 (+) True CI01000012_11277561_11292490
CI01000012_11319849_11326035.mRNA mRNA downstream 164002 11319060 ~ 11326904 (+) True CI01000012_11319849_11326035
CI01000012_11616967_11694276.mRNA mRNA downstream 460489 11615547 ~ 11694284 (+) False CI01000012_11616967_11694276
CI01000012_11698150_11702986.mRNA mRNA downstream 542057 11697115 ~ 11703213 (+) True CI01000012_11698150_11702986
CI01000012_11859839_11869022.mRNA mRNA downstream 704691 11859749 ~ 11870657 (+) True CI01000012_11859839_11869022
TU86153 other upstream 9032 11144817 ~ 11145739 (+) True G75533
TU85876 other upstream 930484 10221955 ~ 10222037 (+) True G75291
TU83914 other upstream 2787144 8366806 ~ 8367627 (+) False G73578
TU87145 other downstream 1475697 12630755 ~ 12675666 (+) True G76385
TU87131 other downstream 1590473 12745531 ~ 12749169 (+) False G76374
TU87240 other downstream 1860448 13015506 ~ 13023794 (+) True G76462
TU87436 other downstream 2496801 13651859 ~ 13652234 (+) True G76645
TU87448 other downstream 2548429 13703487 ~ 13718704 (+) False G76656

Expression Profile