RNA id: TU86212


Basic Information

Item Value
RNA id TU86212
length 227
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G75588
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 11185061 ~ 11185287 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AACAGAATTCCTGGTAAAAAACTACAAGCAAATAATGTGAACTGATTCACAGTGCTTCATGGCAGTGGGTGTTCCCTGCAGAGCTCTTTTGCCATGATTTGCTTGTCACGACTCTATATGATTGGTGGAATTTTCTGTACAGCATCATGGGTAATGTAGTTTTCACCACAAATTCCCGTTAAACATAAAACATGAAATAATGTGAACGCATGGCTTCAATAAAAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86207 lncRNA upstream 10346 11174487 ~ 11174715 (+) True G75583
TU86202 lncRNA upstream 16280 11168553 ~ 11168781 (+) True G75578
TU86195 lncRNA upstream 22516 11162228 ~ 11162545 (+) True G75571
TU86190 lncRNA upstream 30003 11154771 ~ 11155058 (+) True G75566
TU86187 lncRNA upstream 32677 11152059 ~ 11152384 (+) True G75563
TU86724 lncRNA downstream 66530 11251817 ~ 11252102 (+) True G76018
TU86755 lncRNA downstream 418154 11603441 ~ 11624507 (+) True G76039
TU86866 lncRNA downstream 589252 11774539 ~ 11774869 (+) True G76137
TU86867 lncRNA downstream 589698 11774985 ~ 11775184 (+) True G76138
TU86872 lncRNA downstream 600193 11785480 ~ 11785691 (+) True G76143
CI01000012_11091957_11093675.mRNA mRNA upstream 91287 11091957 ~ 11093774 (+) True CI01000012_11091957_11093675
CI01000012_11043669_11044569.mRNA mRNA upstream 140420 11043627 ~ 11044641 (+) False CI01000012_11043669_11044569
CI01000012_11011437_11013922.mRNA mRNA upstream 171130 11011364 ~ 11013931 (+) True CI01000012_11011437_11013922
CI01000012_10922409_10930704.mRNA mRNA upstream 253776 10922409 ~ 10931285 (+) True CI01000012_10922409_10930704
CI01000012_10892631_10918617.mRNA mRNA upstream 266444 10892631 ~ 10918617 (+) True CI01000012_10892631_10918617
CI01000012_11277561_11292490.mRNA mRNA downstream 92274 11277561 ~ 11292636 (+) True CI01000012_11277561_11292490
CI01000012_11319849_11326035.mRNA mRNA downstream 133773 11319060 ~ 11326904 (+) True CI01000012_11319849_11326035
CI01000012_11616967_11694276.mRNA mRNA downstream 430260 11615547 ~ 11694284 (+) False CI01000012_11616967_11694276
CI01000012_11698150_11702986.mRNA mRNA downstream 511828 11697115 ~ 11703213 (+) True CI01000012_11698150_11702986
CI01000012_11859839_11869022.mRNA mRNA downstream 674462 11859749 ~ 11870657 (+) True CI01000012_11859839_11869022
TU86153 other upstream 39322 11144817 ~ 11145739 (+) True G75533
TU85876 other upstream 960774 10221955 ~ 10222037 (+) True G75291
TU83914 other upstream 2817434 8366806 ~ 8367627 (+) False G73578
TU87145 other downstream 1445468 12630755 ~ 12675666 (+) True G76385
TU87131 other downstream 1560244 12745531 ~ 12749169 (+) False G76374
TU87240 other downstream 1830219 13015506 ~ 13023794 (+) True G76462
TU87436 other downstream 2466572 13651859 ~ 13652234 (+) True G76645
TU87448 other downstream 2518200 13703487 ~ 13718704 (+) False G76656

Expression Profile