RNA id: TU86939



Basic Information


Item Value
RNA id TU86939
length 918
lncRNA type read_through
GC content 0.34
exon number 2
gene id G76198
representative True

Chromosome Information


Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 11920259 ~ 11925517 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AAAAAAGTAAAAATCTTACAACTTTGAGTTGATCTACAATACTGTTTGAGTTTGGGGTCGGAAAGATTTTGTAATGATTTTGAAAGAAGTCTTTTACCAGTCTGCTCACCAAGGGTGCAAAAATACCAAGGGTGAAATATTAGAAGGAATTAAAATAACTGTTTTCTACTTTAATACATTTTAAAATGTAATTTATTCCTGTGATGGCAAAGCTGAATTTTCAGCAGCCATTACTGCCATCTTCTGTCACCTGATCCTTCAGAAATCATTATAATATGATGATTTTGGTGCTCAGGAAACATTTCTTATTATTAGCAGTATTGAAAACAGTTGTGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTAAGTTGACAAACATTAAGTTTAATACAATTTATTGAGGTACTAATCATGTCATCATTGGATCAAATGCAAATAAAGGCACTGTACATTTAGTTTAAAAAAGACATAGAACACAGTAATGTAATAGTGTTTCACCGGTCTCTTTAGTGTTCTTGCAATCCTCATCTCTGATCTGTAGTACTTTTATGTACTGTGAATTTGAAATGATTTAAAAGATGAAATTTGTCTTGACTGTACTATTAATACTTATTGGGAAAAGATCAAGTGTAACAGGCAGACAACACAGTCAAAACTGATATGGTGATAATTGTGGTACATGAAGTTTAACAATATTTTTGATCCAGTTTTACAGGCTACACAGGTGGACTGACAAGCCGTCAAGCGAGAGGATCCATTCAGAAGACAGAGGCTTGATCTATGAAGGTTGCGAGGGTGATGTCACGCTGTGAGAGTCCTCCACATTCATGAGTACTGAGGGTGATTTGAACCTACCAGAGAAAAAACAGGCAGACACAGTCAACATGAAATGAAAATTGGCCGCATTTATTT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU87010 lncRNA upstream 24060 11895999 ~ 11896199 (+) True G76261
TU86910 lncRNA upstream 78448 11840055 ~ 11841811 (+) True G76181
TU86881 lncRNA upstream 126041 11794011 ~ 11794218 (+) True G76152
TU86880 lncRNA upstream 128110 11791948 ~ 11792149 (+) True G76151
TU86879 lncRNA upstream 128617 11791343 ~ 11791642 (+) True G76150
TU86996 lncRNA downstream 39007 11964524 ~ 11965309 (+) True G76247
TU86961 lncRNA downstream 100326 12025843 ~ 12029190 (+) True G76212
TU86985 lncRNA downstream 104773 12030290 ~ 12031920 (+) True G76236
TU87030 lncRNA downstream 108286 12033803 ~ 12034004 (+) True G76281
TU86987 lncRNA downstream 108998 12034515 ~ 12035608 (+) True G76238
CI01000012_11897443_11903607.mRNA mRNA upstream 16652 11897443 ~ 11903607 (+) True CI01000012_11897443_11903607
CI01000012_11874504_11884601.mRNA mRNA upstream 34967 11874504 ~ 11885292 (+) True CI01000012_11874504_11884601
CI01000012_11859839_11869022.mRNA mRNA upstream 49602 11859749 ~ 11870657 (+) True CI01000012_11859839_11869022
CI01000012_11698150_11702986.mRNA mRNA upstream 217046 11697115 ~ 11703213 (+) True CI01000012_11698150_11702986
CI01000012_11616967_11694276.mRNA mRNA upstream 225975 11615547 ~ 11694284 (+) False CI01000012_11616967_11694276
CI01000012_11932267_11962143.mRNA mRNA downstream 6750 11932267 ~ 11962208 (+) True CI01000012_11932267_11962143
CI01000012_11981083_11993407.mRNA mRNA downstream 55566 11981083 ~ 11994093 (+) True CI01000012_11981083_11993407
CI01000012_11995593_12005292.mRNA mRNA downstream 70076 11995593 ~ 12005352 (+) True CI01000012_11995593_12005292
CI01000012_12016924_12024791.mRNA mRNA downstream 91407 12016924 ~ 12025035 (+) True CI01000012_12016924_12024791
CI01000012_12054427_12060390.mRNA mRNA downstream 128910 12054427 ~ 12060390 (+) True CI01000012_12054427_12060390
TU86153 other upstream 774520 11144817 ~ 11145739 (+) True G75533
TU85876 other upstream 1695972 10221955 ~ 10222037 (+) True G75291
TU83914 other upstream 3552632 8366806 ~ 8367627 (+) False G73578
TU87145 other downstream 705238 12630755 ~ 12675666 (+) True G76385
TU87131 other downstream 820014 12745531 ~ 12749169 (+) False G76374
TU87240 other downstream 1089989 13015506 ~ 13023794 (+) True G76462
TU87436 other downstream 1726342 13651859 ~ 13652234 (+) True G76645
TU87448 other downstream 1777970 13703487 ~ 13718704 (+) False G76656

Expression Profile