RNA id: TU86996



Basic Information


Item Value
RNA id TU86996
length 786
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G76247
representative True

Chromosome Information


Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 11964524 ~ 11965309 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CATGTGAACCTGTTCACTCTGCATGAAATTCAATTGAACCCCATTTCTCTCTGTTAGTTAATGAGAAAGCTTTTCATTTTGAGTATCACATTACCCATTTAAACTAAGTAGAGCTTATGAGTGAAGCAAACTGGTCAACTGATTTTGGGAATGGACTAATGACTAGTGTTGTGCTACTCCATGTCCCAGTGGGAATATGGACTTCTTTTAAGAGCTATAGCTTTATGTACCACAGTAAGCACTTTTTGAATCAATATTTTATTAATCAAGTACTTATCATTATTATTTAATGCAAGGCATGTACTGTAGATGCAAAGCTATATTAGCAAAATACCACTGAGAATAGCTCCACCATGTTTGATGTAAACAACGCTTTCCTATTGTCTACTTGTGCAGTACTAATGAGAATCTGTTTGACAGAATCTGACAGTAAAAATTGTGATCTTATCTATTATAAGACCGCCTTTCATCTGAAAATGATCTTGTCAAGTAACCACTTTTTTTTTTTTTTAAAAAGGGAGGTATATGTCATGAATCTGCCTATGCATTTGCCTATCTATATTGATTTACATTGCCCATATGTCTGAAAATACCACTGTGTGTCTGGTTTAGAGTAACCTGAGCTTTTTTAATCTGCATCATGTATATGGTTATGAGCCTACATGCTGCTATGTAAACAAAACCATCCTGTGGTTAATATGCAGAGTAAGTGAAATATTTATACGGCATAACAAACATCTGAACAAAAAGGTGGAGCTGGAAACAACACCTTTGTGCTCTATTTTT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU86939 lncRNA upstream 39007 11920259 ~ 11925517 (+) True G76198
TU86938 lncRNA upstream 39036 11920259 ~ 11925488 (+) False G76198
TU87010 lncRNA upstream 68325 11895999 ~ 11896199 (+) True G76261
TU86910 lncRNA upstream 122713 11840055 ~ 11841811 (+) True G76181
TU86881 lncRNA upstream 170306 11794011 ~ 11794218 (+) True G76152
TU86961 lncRNA downstream 60534 12025843 ~ 12029190 (+) True G76212
TU86985 lncRNA downstream 64981 12030290 ~ 12031920 (+) True G76236
TU87030 lncRNA downstream 68494 12033803 ~ 12034004 (+) True G76281
TU86987 lncRNA downstream 69206 12034515 ~ 12035608 (+) True G76238
TU86994 lncRNA downstream 70581 12035890 ~ 12036924 (+) True G76245
CI01000012_11932267_11962143.mRNA mRNA upstream 2316 11932267 ~ 11962208 (+) True CI01000012_11932267_11962143
CI01000012_11913513_11921468.mRNA mRNA upstream 42589 11913513 ~ 11921935 (+) True CI01000012_11913513_11921468
CI01000012_11897443_11903607.mRNA mRNA upstream 60917 11897443 ~ 11903607 (+) True CI01000012_11897443_11903607
CI01000012_11874504_11884601.mRNA mRNA upstream 79232 11874504 ~ 11885292 (+) True CI01000012_11874504_11884601
CI01000012_11859839_11869022.mRNA mRNA upstream 93867 11859749 ~ 11870657 (+) True CI01000012_11859839_11869022
CI01000012_11981083_11993407.mRNA mRNA downstream 15774 11981083 ~ 11994093 (+) True CI01000012_11981083_11993407
CI01000012_11995593_12005292.mRNA mRNA downstream 30284 11995593 ~ 12005352 (+) True CI01000012_11995593_12005292
CI01000012_12016924_12024791.mRNA mRNA downstream 51615 12016924 ~ 12025035 (+) True CI01000012_12016924_12024791
CI01000012_12054427_12060390.mRNA mRNA downstream 89118 12054427 ~ 12060390 (+) True CI01000012_12054427_12060390
CI01000012_12128962_12130578.mRNA mRNA downstream 163137 12128446 ~ 12132127 (+) True CI01000012_12128962_12130578
TU86153 other upstream 818785 11144817 ~ 11145739 (+) True G75533
TU85876 other upstream 1740237 10221955 ~ 10222037 (+) True G75291
TU83914 other upstream 3596897 8366806 ~ 8367627 (+) False G73578
TU87145 other downstream 665446 12630755 ~ 12675666 (+) True G76385
TU87131 other downstream 780222 12745531 ~ 12749169 (+) False G76374
TU87240 other downstream 1050197 13015506 ~ 13023794 (+) True G76462
TU87436 other downstream 1686550 13651859 ~ 13652234 (+) True G76645
TU87448 other downstream 1738178 13703487 ~ 13718704 (+) False G76656

Expression Profile