Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU86961 |
| length | 3348 |
| lncRNA type | antisense_over |
| GC content | 0.40 |
| exon number | 1 |
| gene id | G76212 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000012 |
| NCBI id | null |
| chromosome length | 13770000 |
| location | 12025843 ~ 12029190 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU86996 | lncRNA | upstream | 60534 | 11964524 ~ 11965309 (+) | True | G76247 |
| TU86939 | lncRNA | upstream | 100326 | 11920259 ~ 11925517 (+) | True | G76198 |
| TU86938 | lncRNA | upstream | 100355 | 11920259 ~ 11925488 (+) | False | G76198 |
| TU87010 | lncRNA | upstream | 129644 | 11895999 ~ 11896199 (+) | True | G76261 |
| TU86910 | lncRNA | upstream | 184032 | 11840055 ~ 11841811 (+) | True | G76181 |
| TU86985 | lncRNA | downstream | 1100 | 12030290 ~ 12031920 (+) | True | G76236 |
| TU87030 | lncRNA | downstream | 4613 | 12033803 ~ 12034004 (+) | True | G76281 |
| TU86987 | lncRNA | downstream | 5325 | 12034515 ~ 12035608 (+) | True | G76238 |
| TU86994 | lncRNA | downstream | 6700 | 12035890 ~ 12036924 (+) | True | G76245 |
| TU87031 | lncRNA | downstream | 7927 | 12037117 ~ 12037387 (+) | True | G76282 |
| CI01000012_12016924_12024791.mRNA | mRNA | upstream | 808 | 12016924 ~ 12025035 (+) | True | CI01000012_12016924_12024791 |
| CI01000012_11995593_12005292.mRNA | mRNA | upstream | 20491 | 11995593 ~ 12005352 (+) | True | CI01000012_11995593_12005292 |
| CI01000012_11981083_11993407.mRNA | mRNA | upstream | 31750 | 11981083 ~ 11994093 (+) | True | CI01000012_11981083_11993407 |
| CI01000012_11932267_11962143.mRNA | mRNA | upstream | 63635 | 11932267 ~ 11962208 (+) | True | CI01000012_11932267_11962143 |
| CI01000012_11913513_11921468.mRNA | mRNA | upstream | 103908 | 11913513 ~ 11921935 (+) | True | CI01000012_11913513_11921468 |
| CI01000012_12054427_12060390.mRNA | mRNA | downstream | 25237 | 12054427 ~ 12060390 (+) | True | CI01000012_12054427_12060390 |
| CI01000012_12128962_12130578.mRNA | mRNA | downstream | 99256 | 12128446 ~ 12132127 (+) | True | CI01000012_12128962_12130578 |
| CI01000012_12159352_12162539.mRNA | mRNA | downstream | 129458 | 12158648 ~ 12162839 (+) | True | CI01000012_12159352_12162539 |
| CI01000012_12173747_12212480.mRNA | mRNA | downstream | 144198 | 12173388 ~ 12213285 (+) | True | CI01000012_12173747_12212480 |
| CI01000012_12220568_12234927.mRNA | mRNA | downstream | 190808 | 12219998 ~ 12235263 (+) | True | CI01000012_12220568_12234927 |
| TU86153 | other | upstream | 880104 | 11144817 ~ 11145739 (+) | True | G75533 |
| TU85876 | other | upstream | 1801556 | 10221955 ~ 10222037 (+) | True | G75291 |
| TU83914 | other | upstream | 3658216 | 8366806 ~ 8367627 (+) | False | G73578 |
| TU87145 | other | downstream | 601565 | 12630755 ~ 12675666 (+) | True | G76385 |
| TU87131 | other | downstream | 716341 | 12745531 ~ 12749169 (+) | False | G76374 |
| TU87240 | other | downstream | 986316 | 13015506 ~ 13023794 (+) | True | G76462 |
| TU87436 | other | downstream | 1622669 | 13651859 ~ 13652234 (+) | True | G76645 |
| TU87448 | other | downstream | 1674297 | 13703487 ~ 13718704 (+) | False | G76656 |
