RNA id: TU86985



Basic Information


Item Value
RNA id TU86985
length 1631
lncRNA type antisense_over
GC content 0.37
exon number 1
gene id G76236
representative True

Chromosome Information


Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 12030290 ~ 12031920 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AAACAGTACTATTATACCCTGGGCATATAGGAGAAAGAGAAACACTGGGAAGGCAAAATGCATGAAATTTTACTAGAATGTATTTAATCATCCGATGTTAACTTTGGCCATAATATGTAATGCTTATTTGAGTTAATCTTCATACAAGATATGCTCAAATAAGAATAATATATTATGGTCAGAGCTAACCTCTTTAAGAAGAATTCCAACCCAATCAGTAACAATTTTCAGGCATCCATCACCATGACCTACCACCAACAAATGTTCATAAGATTTGAGGAAATATGGCTCCCTCACCCAAACAATAATTGTACAATATGGAAAAAAAACAATATGTACAAGTACCTCTGAGCCACTGACAAAAAACTGTAGGAGGAAGAGTACACTAACAATATGAATTTTTAAATCAAGCTTTATAATAGATCTAAGTGTTATTACTTTAATTTTTTAATTGTAGTTCATTTTTTATATTATTGTAATTTTTTATTCTTAAGTTGTAACTGAATGTTTCCCAATAAAGAAAAAAAGAGAAAAAAAGAGATTAAATAAAGGGCCATTCACAGAGAACACATTTCTTTATTCCACTGTGCAGCTTTGTTATTATTTTTCTATGTAAATATTGAACGCCACCTTTTTTAGAATGCTGTGTAGATGTTAGTCTAAGATAAAAAAAGGAACATTTTTAAAAAGCACAAAAGACCTTTTGTTTCTTTTGATTTCACTGCCCTGCATCTTGCGTATTTGAACGCAAAAACGCGTCCTGTGTGTGCAGTCCATCAATAAAGAATCTTTTTCTGAAACTGCATCATGCAATTGGCATGAAATGAGAACTCTTCTTAAAGGAAGATATTTTAAAGAATGTTGGTAATCAAACAGTTGATGGCAGCCTTTGACTTCCACATTAAGAAAAAATACTATGGAAGTCAATGGCTACCGTCAACTGTCTGGTTACCAACATTCTTTAAAATATCCTCTTTTGTGTTCAACAGAAGAAAGAAACTCATACAGGTTTGGAACAACACGAGGGTGAGTAAATGATGACAAAATTTTCATTTTTGGGTGAACTATCCCTTTAAAGCACTGCATGATAAAGTCGAGGGCTCTCACCTTGGATCACAGTCGATAAGAGCCCATCCACCATGGAACTTCTCATCATCAGGTAGCAGCAGCTGCATGTACGTCTGCAGCAGGAGGCTGACCTGCTCCTGAGCTCCTCTTTGGCTCTCCTTCTCTTTCTCCTCATGCTCCTTTTCTTTGCTGAAGATGGAGTACAGGTCTTCTGTTACTGGATGGCCCATCATCAGGTCTGGGAGGATCAGAGATACAGTACATGGCAAATGAGGCACTAAGGTGTGTAGATTAAAGGTGAGAATTAAAATGACATTCTTTCACGCTCACCAATGACGGCCTGTCGGTAGGCATCTCTGAAGCGGTTCAGATAATAACGATTAGCTGAGTTCACACCATCCTTCATCACGCCCGCTAACTTTCGCTCTCCTGTTCGTGTGAAATCTCCCTACACAACAGATTGCACATATCAGACTAAGTGGACAAGTTTAGTGGGTAGTCATCACTGTCCTACTTCAGTTATGTTATGAGACTTTAGTCTCAGGTTTTACTCCCATTACAGC

Function


GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU86961 lncRNA upstream 1100 12025843 ~ 12029190 (+) True G76212
TU86996 lncRNA upstream 64981 11964524 ~ 11965309 (+) True G76247
TU86939 lncRNA upstream 104773 11920259 ~ 11925517 (+) True G76198
TU86938 lncRNA upstream 104802 11920259 ~ 11925488 (+) False G76198
TU87010 lncRNA upstream 134091 11895999 ~ 11896199 (+) True G76261
TU87030 lncRNA downstream 1883 12033803 ~ 12034004 (+) True G76281
TU86987 lncRNA downstream 2595 12034515 ~ 12035608 (+) True G76238
TU86994 lncRNA downstream 3970 12035890 ~ 12036924 (+) True G76245
TU87031 lncRNA downstream 5197 12037117 ~ 12037387 (+) True G76282
TU87032 lncRNA downstream 6612 12038532 ~ 12039038 (+) True G76283
CI01000012_12016924_12024791.mRNA mRNA upstream 5255 12016924 ~ 12025035 (+) True CI01000012_12016924_12024791
CI01000012_11995593_12005292.mRNA mRNA upstream 24938 11995593 ~ 12005352 (+) True CI01000012_11995593_12005292
CI01000012_11981083_11993407.mRNA mRNA upstream 36197 11981083 ~ 11994093 (+) True CI01000012_11981083_11993407
CI01000012_11932267_11962143.mRNA mRNA upstream 68082 11932267 ~ 11962208 (+) True CI01000012_11932267_11962143
CI01000012_11913513_11921468.mRNA mRNA upstream 108355 11913513 ~ 11921935 (+) True CI01000012_11913513_11921468
CI01000012_12054427_12060390.mRNA mRNA downstream 22507 12054427 ~ 12060390 (+) True CI01000012_12054427_12060390
CI01000012_12128962_12130578.mRNA mRNA downstream 96526 12128446 ~ 12132127 (+) True CI01000012_12128962_12130578
CI01000012_12159352_12162539.mRNA mRNA downstream 126728 12158648 ~ 12162839 (+) True CI01000012_12159352_12162539
CI01000012_12173747_12212480.mRNA mRNA downstream 141468 12173388 ~ 12213285 (+) True CI01000012_12173747_12212480
CI01000012_12220568_12234927.mRNA mRNA downstream 188078 12219998 ~ 12235263 (+) True CI01000012_12220568_12234927
TU86153 other upstream 884551 11144817 ~ 11145739 (+) True G75533
TU85876 other upstream 1806003 10221955 ~ 10222037 (+) True G75291
TU83914 other upstream 3662663 8366806 ~ 8367627 (+) False G73578
TU87145 other downstream 598835 12630755 ~ 12675666 (+) True G76385
TU87131 other downstream 713611 12745531 ~ 12749169 (+) False G76374
TU87240 other downstream 983586 13015506 ~ 13023794 (+) True G76462
TU87436 other downstream 1619939 13651859 ~ 13652234 (+) True G76645
TU87448 other downstream 1671567 13703487 ~ 13718704 (+) False G76656

Expression Profile