RNA id: TU87030


Basic Information

Item Value
RNA id TU87030
length 202
lncRNA type intronic
GC content 0.25
exon number 1
gene id G76281
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 12033803 ~ 12034004 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTAATAATGCAGGTGGTCGTTTGTTTTGACCATTAACACATTCATTTTGACATAACATAATTCTGTTCTGTGTTGTTTCTAATAAAAAAAAAGCTAAACTAAAAAAAGTTTAGTGTCAGAGTTTTTTTTTTTTTTTTTAAAGAAAATAATACTTTTATTCAGCAAGGACAAATTAGATTGATCAAAAGTGACAATAAAGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86985 lncRNA upstream 1883 12030290 ~ 12031920 (+) True G76236
TU86961 lncRNA upstream 4613 12025843 ~ 12029190 (+) True G76212
TU86996 lncRNA upstream 68494 11964524 ~ 11965309 (+) True G76247
TU86939 lncRNA upstream 108286 11920259 ~ 11925517 (+) True G76198
TU86938 lncRNA upstream 108315 11920259 ~ 11925488 (+) False G76198
TU86987 lncRNA downstream 511 12034515 ~ 12035608 (+) True G76238
TU86994 lncRNA downstream 1886 12035890 ~ 12036924 (+) True G76245
TU87031 lncRNA downstream 3113 12037117 ~ 12037387 (+) True G76282
TU87032 lncRNA downstream 4528 12038532 ~ 12039038 (+) True G76283
TU87033 lncRNA downstream 6057 12040061 ~ 12040357 (+) True G76284
CI01000012_12016924_12024791.mRNA mRNA upstream 8768 12016924 ~ 12025035 (+) True CI01000012_12016924_12024791
CI01000012_11995593_12005292.mRNA mRNA upstream 28451 11995593 ~ 12005352 (+) True CI01000012_11995593_12005292
CI01000012_11981083_11993407.mRNA mRNA upstream 39710 11981083 ~ 11994093 (+) True CI01000012_11981083_11993407
CI01000012_11932267_11962143.mRNA mRNA upstream 71595 11932267 ~ 11962208 (+) True CI01000012_11932267_11962143
CI01000012_11913513_11921468.mRNA mRNA upstream 111868 11913513 ~ 11921935 (+) True CI01000012_11913513_11921468
CI01000012_12054427_12060390.mRNA mRNA downstream 20423 12054427 ~ 12060390 (+) True CI01000012_12054427_12060390
CI01000012_12128962_12130578.mRNA mRNA downstream 94442 12128446 ~ 12132127 (+) True CI01000012_12128962_12130578
CI01000012_12159352_12162539.mRNA mRNA downstream 124644 12158648 ~ 12162839 (+) True CI01000012_12159352_12162539
CI01000012_12173747_12212480.mRNA mRNA downstream 139384 12173388 ~ 12213285 (+) True CI01000012_12173747_12212480
CI01000012_12220568_12234927.mRNA mRNA downstream 185994 12219998 ~ 12235263 (+) True CI01000012_12220568_12234927
TU86153 other upstream 888064 11144817 ~ 11145739 (+) True G75533
TU85876 other upstream 1809516 10221955 ~ 10222037 (+) True G75291
TU83914 other upstream 3666176 8366806 ~ 8367627 (+) False G73578
TU87145 other downstream 596751 12630755 ~ 12675666 (+) True G76385
TU87131 other downstream 711527 12745531 ~ 12749169 (+) False G76374
TU87240 other downstream 981502 13015506 ~ 13023794 (+) True G76462
TU87436 other downstream 1617855 13651859 ~ 13652234 (+) True G76645
TU87448 other downstream 1669483 13703487 ~ 13718704 (+) False G76656

Expression Profile