RNA id: TU87042


Basic Information

Item Value
RNA id TU87042
length 329
lncRNA type antisense_over
GC content 0.49
exon number 1
gene id G76293
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 12068838 ~ 12069166 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTCAAGAAAAAGGAGCAGCATCCAGACTTCTTCTCCTCAGTGGGGTGGGTTCGCACTTTATCCTCAGCCAAATAGGGATTAGACAGATTCAGTTGGTTCATGTTCTCCAAAGAACTGTGAAACATGGGCTGAGGGTCGTAGATGGTGCTGATGGGGCGTCTGATGGGTGCAGGAGAGCCACTGTAGGCCTGATTCACCCAGGCTCCTTTCCCAAAGTTATCCAGCTCGCACGCTACTGTACTGCCCAGCTGATTTTCTGCCCGGTTATTGAGGTGTTGCATCGTAGTAAATTGAGAGGTTAAGGTAGATGGATTTATCATGAAATGCTC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87039 lncRNA upstream 23525 12045077 ~ 12045313 (+) True G76290
TU86969 lncRNA upstream 24653 12043779 ~ 12044185 (+) True G76220
TU87038 lncRNA upstream 25676 12042883 ~ 12043162 (+) True G76289
TU87037 lncRNA upstream 26259 12042365 ~ 12042579 (+) True G76288
TU87036 lncRNA upstream 26527 12042032 ~ 12042311 (+) True G76287
TU87048 lncRNA downstream 7744 12076910 ~ 12077124 (+) True G76299
TU87055 lncRNA downstream 41261 12110427 ~ 12110646 (+) True G76306
TU87064 lncRNA downstream 95017 12164183 ~ 12164411 (+) True G76315
TU87065 lncRNA downstream 95795 12164961 ~ 12165232 (+) True G76316
TU87067 lncRNA downstream 99002 12168168 ~ 12168455 (+) True G76318
CI01000012_12054427_12060390.mRNA mRNA upstream 8448 12054427 ~ 12060390 (+) True CI01000012_12054427_12060390
CI01000012_12016924_12024791.mRNA mRNA upstream 43803 12016924 ~ 12025035 (+) True CI01000012_12016924_12024791
CI01000012_11995593_12005292.mRNA mRNA upstream 63486 11995593 ~ 12005352 (+) True CI01000012_11995593_12005292
CI01000012_11981083_11993407.mRNA mRNA upstream 74745 11981083 ~ 11994093 (+) True CI01000012_11981083_11993407
CI01000012_11932267_11962143.mRNA mRNA upstream 106630 11932267 ~ 11962208 (+) True CI01000012_11932267_11962143
CI01000012_12128962_12130578.mRNA mRNA downstream 59280 12128446 ~ 12132127 (+) True CI01000012_12128962_12130578
CI01000012_12159352_12162539.mRNA mRNA downstream 89482 12158648 ~ 12162839 (+) True CI01000012_12159352_12162539
CI01000012_12173747_12212480.mRNA mRNA downstream 104222 12173388 ~ 12213285 (+) True CI01000012_12173747_12212480
CI01000012_12220568_12234927.mRNA mRNA downstream 150832 12219998 ~ 12235263 (+) True CI01000012_12220568_12234927
CI01000012_12270454_12276521.mRNA mRNA downstream 201180 12270346 ~ 12276625 (+) True CI01000012_12270454_12276521
TU86153 other upstream 923099 11144817 ~ 11145739 (+) True G75533
TU85876 other upstream 1844551 10221955 ~ 10222037 (+) True G75291
TU83914 other upstream 3701211 8366806 ~ 8367627 (+) False G73578
TU87145 other downstream 561589 12630755 ~ 12675666 (+) True G76385
TU87131 other downstream 676365 12745531 ~ 12749169 (+) False G76374
TU87240 other downstream 946340 13015506 ~ 13023794 (+) True G76462
TU87436 other downstream 1582693 13651859 ~ 13652234 (+) True G76645
TU87448 other downstream 1634321 13703487 ~ 13718704 (+) False G76656

Expression Profile