RNA id: TU87077


Basic Information

Item Value
RNA id TU87077
length 260
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G76327
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 12432899 ~ 12433158 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTCAACCTTAATGTTATGAAGCGACAAGAATACTTTTTGTGCGCCAAAAAAAACAAAATAACGACTTTATTCAACAATATCTAGTGAAGGGCGATTTCAAAACACTGCTTCCTGAAGCTTTGAAGCTTTACGAATCTTTTGTTTCGAATCAGTGGTTCGGAGTGCGTATCAAACTGCCAAAGTCACATGAACCATTGAAATTTCGAAACACTTATGACCCAACGAAGCCTCGTTTACTGAAATCACATGACTTTGGCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87067 lncRNA upstream 264444 12168168 ~ 12168455 (+) True G76318
TU87065 lncRNA upstream 267667 12164961 ~ 12165232 (+) True G76316
TU87064 lncRNA upstream 268488 12164183 ~ 12164411 (+) True G76315
TU87055 lncRNA upstream 322253 12110427 ~ 12110646 (+) True G76306
TU87048 lncRNA upstream 355775 12076910 ~ 12077124 (+) True G76299
TU86971 lncRNA downstream 511 12433669 ~ 12435061 (+) True G76222
TU86979 lncRNA downstream 2873 12436031 ~ 12436325 (+) True G76230
TU86993 lncRNA downstream 3954 12437112 ~ 12437490 (+) True G76244
TU87078 lncRNA downstream 4536 12437694 ~ 12437915 (+) True G76328
TU87079 lncRNA downstream 4851 12438009 ~ 12438229 (+) True G76329
CI01000012_12381049_12417489.mRNA mRNA upstream 14202 12380192 ~ 12418697 (+) True CI01000012_12381049_12417489
CI01000012_12378120_12378419.mRNA mRNA upstream 54237 12378120 ~ 12378662 (+) True CI01000012_12378120_12378419
CI01000012_12292583_12371612.mRNA mRNA upstream 61287 12292583 ~ 12371612 (+) True CI01000012_12292583_12371612
CI01000012_12270454_12276521.mRNA mRNA upstream 156274 12270346 ~ 12276625 (+) True CI01000012_12270454_12276521
CI01000012_12220568_12234927.mRNA mRNA upstream 197636 12219998 ~ 12235263 (+) True CI01000012_12220568_12234927
CI01000012_12440074_12465741.mRNA mRNA downstream 6916 12440074 ~ 12466032 (+) True CI01000012_12440074_12465741
CI01000012_12489485_12490402.mRNA mRNA downstream 56129 12489287 ~ 12490431 (+) True CI01000012_12489485_12490402
CI01000012_12505469_12509093.mRNA mRNA downstream 72311 12505469 ~ 12509316 (+) True CI01000012_12505469_12509093
CI01000012_12536242_12538668.mRNA mRNA downstream 102918 12536076 ~ 12538728 (+) True CI01000012_12536242_12538668
CI01000012_12585843_12587149.mRNA mRNA downstream 152685 12585843 ~ 12587209 (+) True CI01000012_12585843_12587149
TU86153 other upstream 1287160 11144817 ~ 11145739 (+) True G75533
TU85876 other upstream 2208612 10221955 ~ 10222037 (+) True G75291
TU83914 other upstream 4065272 8366806 ~ 8367627 (+) False G73578
TU87145 other downstream 197597 12630755 ~ 12675666 (+) True G76385
TU87131 other downstream 312373 12745531 ~ 12749169 (+) False G76374
TU87240 other downstream 582348 13015506 ~ 13023794 (+) True G76462
TU87436 other downstream 1218701 13651859 ~ 13652234 (+) True G76645
TU87448 other downstream 1270329 13703487 ~ 13718704 (+) False G76656

Expression Profile