RNA id: TU87131



Basic Information


Item Value
RNA id TU87131
length 1588
RNA type TUCP
GC content 0.49
exon number 6
gene id G76374
representative False

Chromosome Information


Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 12745531 ~ 12749169 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CTTTTCATCATCACTCTAGATCGCTAAGTTTCCAGTTTCAAGTCAAACAATTTATTAACACAAACGTGTCACAAATACCAAATAATGGACTTTAATAAATTAATGACTATGTATGTACAGATTACAGTCTTGTGATAGTCAACATGGTATAATGGTTTTCTGGATCTTGATTCTGTTTGGACAATGCTGGGGCCTGCCTCGTCGTGTTCCTGCTTGGTAATCCAGGGTATGTTCAAGTAACACATGGGTACAAAATAAATCTGTACCAAAGCTGTCCCATAATGATGAATGTACAGTATTCTCCATTATTGCGTGATCCACAGCAAACAGATGCAGGTGATGGATTTAGAAGCACTTGCGGTGGACAATGCTGGGGCCTGCCTCATCGTATTCCTGCTTGGTGATCCACATCTGCTGGAAGGTGGACAGGGAAGCCAAGATGGAGCCACCAATCCATACGGAGTATTTACGCTCAGGTGGGGCAATGATCTTGATCTTCATTGTGCTGGGGGCCAGGGCAGTGATCTCCTTCTGCATACGGTCAGCAATACCTGGGTACATGGTGGTACCACCTGACAAGACATTGTTGGCATACAAGTCCTTCCTGATGTCAATGTCGCACTTCATGATGCTGTTGTAGGCGGTCTCGTGGATTCCGGCAGACTCCATACCAATGAAAGAAGGCTGGAAGAGGGTCTCTGGGCAACGGAAACGCTCATTACCAATGGTGATGACCTGGCCATCGGGCAACTCATAGCTTTTCTCCAGGGAGGAGGAAGAGGCGGCAGTGGCCATCTCATTCTCAAAGTCCAGAGCCACATAGCACAGCTTCTCCTTGATATCACGGACAATCTCACGCTCAGCAGTTGTGACGAAAGAATAACCACGCTCGGTCAGGATCTTCATGAGGTAGTCGGTCAGATCGCGACCAGCCAGATCCAGACGCATGATGGCGTGGGGCAGAGCGTAACCCTCATAGATGGGGACATTGTGGGACACACCATCACCAGAGTCCAGCACAATACCAGTGGTACGGCCAGAAGCGTACAGGGACAGCACAGCCTGAATGGCCACATACATGGCTGGGACGTTGAAGGTCTCAAACATGATCTGGGTCATCTTCTCACGGTTAGCCTTGGGGTTAAGAGGGGCTTCAGTCAGCAGAGTTGGGTGCTCCTCAGGGGCCACGCGGAGCTCATTGTAGAAGGTGTGGTGCCAGATCTTCTCCATATCATCCCAGTTGGTAATGATACCGTGCTCGATGGGGTACTTCAAAGTCAGGATACCCCTCTTGCTCTGAGCTTCATCTCCTACGTATGAGTCCTTCTGACCCATACCCACCATGACACCCTGGAACCTTTCTCTGATGAAGCTCAGTGCAGAACACAACCGCTGATGGATCCAGTCACGGACTGACTGACCCACGAAAACCTTATATACTCTTCGTGTTTGTCCCCATGCGCACTATTGAGGATATCTGTATGTTCAGTTGGAGTTTTCCCCATCCTTCAACCATATTAGGCCCTTGCAGGGTAAGCGAGGGGTGACTTCCTAGTGTCTCCCGCTATCCCCAGGTTCGTAGTGAGCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU87185 lncRNA upstream 27528 12717772 ~ 12718003 (+) True G76419
TU87184 lncRNA upstream 27859 12717464 ~ 12717672 (+) True G76418
TU87144 lncRNA upstream 60064 12685189 ~ 12685467 (+) True G76384
TU87151 lncRNA upstream 61623 12682731 ~ 12683908 (+) True G76391
TU87123 lncRNA upstream 114779 12630517 ~ 12630752 (+) True G76371
TU87127 lncRNA downstream 152917 12902086 ~ 12903289 (+) True G76372
TU87200 lncRNA downstream 159830 12908999 ~ 12909507 (+) True G76434
TU87202 lncRNA downstream 204397 12953566 ~ 12953765 (+) True G76436
TU87204 lncRNA downstream 205279 12954448 ~ 12955634 (+) True G76437
TU87206 lncRNA downstream 206584 12955753 ~ 12956076 (+) True G76438
CI01000012_12733327_12736780.mRNA mRNA upstream 8262 12733327 ~ 12737269 (+) True CI01000012_12733327_12736780
CI01000012_12695280_12699262.mRNA mRNA upstream 46105 12695280 ~ 12699426 (+) True CI01000012_12695280_12699262
CI01000012_12686685_12690637.mRNA mRNA upstream 54364 12686685 ~ 12691167 (+) True CI01000012_12686685_12690637
CI01000012_12667656_12672197.mRNA mRNA upstream 73284 12667656 ~ 12672247 (+) True CI01000012_12667656_12672197
CI01000012_12653960_12664480.mRNA mRNA upstream 80410 12653831 ~ 12665121 (+) True CI01000012_12653960_12664480
CI01000012_12761469_12776431.mRNA mRNA downstream 12300 12761469 ~ 12776470 (+) True CI01000012_12761469_12776431
CI01000012_12832011_12865894.mRNA mRNA downstream 82842 12832011 ~ 12865894 (+) True CI01000012_12832011_12865894
CI01000012_12892163_12901139.mRNA mRNA downstream 142994 12892163 ~ 12901715 (+) True CI01000012_12892163_12901139
CI01000012_12930929_12947409.mRNA mRNA downstream 181760 12930929 ~ 12947409 (+) True CI01000012_12930929_12947409
CI01000012_13029637_13033226.mRNA mRNA downstream 280266 13029435 ~ 13033725 (+) False CI01000012_13029637_13033226
TU87145 other upstream 69865 12630755 ~ 12675666 (+) True G76385
TU86153 other upstream 1599792 11144817 ~ 11145739 (+) True G75533
TU85876 other upstream 2521244 10221955 ~ 10222037 (+) True G75291
TU83914 other upstream 4377904 8366806 ~ 8367627 (+) False G73578
TU87240 other downstream 266337 13015506 ~ 13023794 (+) True G76462
TU87436 other downstream 902690 13651859 ~ 13652234 (+) True G76645
TU87448 other downstream 954318 13703487 ~ 13718704 (+) False G76656

Expression Profile