RNA id: TU88047


Basic Information

Item Value
RNA id TU88047
length 226
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G77201
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 12913698 ~ 12913923 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAGCACACTATACTGCAAACATGTCTTGTGTTGGTTTTTACAAACCGAAGATAAAAGTCAAAATTCTTGGTTTGCTGTGATAATCACTATTACACTGCAAATTCTGTCAATAGAGCTTAAACCAGGAACAATCTTTAAAGTTGCAATGAAACAAATAGTGACAGATCTTTTCTTCCATAATAAGGTGGACATTAGAGTGAAGCAGATTATCAACAAAAAAAAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88046 lncRNA downstream 587 12912848 ~ 12913111 (-) True G77200
TU88044 lncRNA downstream 4789 12908629 ~ 12908909 (-) True G77198
TU87797 lncRNA downstream 12021 12900414 ~ 12901677 (-) True G76975
TU87805 lncRNA downstream 14339 12898355 ~ 12899359 (-) True G76982
TU87995 lncRNA downstream 132641 12780760 ~ 12781057 (-) True G77149
TU88048 lncRNA upstream 2508 12916431 ~ 12916673 (-) True G77202
TU88051 lncRNA upstream 5009 12918932 ~ 12919313 (-) True G77205
TU88053 lncRNA upstream 7655 12921578 ~ 12921802 (-) True G77207
TU88086 lncRNA upstream 128090 13042013 ~ 13042222 (-) True G77237
TU88087 lncRNA upstream 128618 13042541 ~ 13042765 (-) True G77238
CI01000012_12902396_12904687.mRNA mRNA downstream 8077 12902161 ~ 12905621 (-) True CI01000012_12902396_12904687
CI01000012_12872801_12891084.mRNA mRNA downstream 22614 12871862 ~ 12891084 (-) True CI01000012_12872801_12891084
CI01000012_12811846_12819195.mRNA mRNA downstream 94337 12811734 ~ 12819361 (-) True CI01000012_12811846_12819195
CI01000012_12783994_12795809.mRNA mRNA downstream 117129 12783924 ~ 12796569 (-) True CI01000012_12783994_12795809
CI01000012_12751670_12759821.mRNA mRNA downstream 153877 12751273 ~ 12759821 (-) True CI01000012_12751670_12759821
CI01000012_12954694_12954954.mRNA mRNA upstream 40537 12954460 ~ 12957833 (-) False CI01000012_12954694_12954954
CI01000012_12960774_12964242.mRNA mRNA upstream 45778 12959701 ~ 12964929 (-) True CI01000012_12960774_12964242
CI01000012_12977279_12978570.mRNA mRNA upstream 63099 12977022 ~ 12978817 (-) True CI01000012_12977279_12978570
CI01000012_13015424_13018020.mRNA mRNA upstream 101451 13015374 ~ 13019645 (-) True CI01000012_13015424_13018020
CI01000012_13041401_13060443.mRNA mRNA upstream 126729 13040652 ~ 13060443 (-) True CI01000012_13041401_13060443
TU87842 other downstream 829438 12080546 ~ 12080752 (-) False G77017
TU87843 other downstream 829438 12080546 ~ 12083845 (-) True G77017
TU87807 other downstream 861491 12049044 ~ 12049222 (-) True G76984
TU86281 other downstream 2292827 10611915 ~ 10620871 (-) False G75608
TU87800 other upstream 40523 12954446 ~ 12955664 (-) True CI01000012_12954694_12954954
TU88148 other upstream 705353 13619276 ~ 13633819 (-) True G77287

Expression Profile