RNA id: TU88087


Basic Information

Item Value
RNA id TU88087
length 225
lncRNA type intronic
GC content 0.29
exon number 1
gene id G77238
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 13042541 ~ 13042765 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAAAAGCTTGCCAGAATAGACCACTATTAGCCTTCAGATGATATAAAGCAGATTTTGTCCATTTTCACCACATGCTAATTCCCCATTTTTATCATCAATCTACACTTACAAAGCAGAGGCTCATCATAACCTTTAAACATTTTGAATTTATTTATAACTTAGAATAAAGAATATTTATATAATGCTTCACACTATTATATTTTAGCTTCAGCAAAAATATATACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88086 lncRNA downstream 319 13042013 ~ 13042222 (-) True G77237
TU88053 lncRNA downstream 120739 12921578 ~ 12921802 (-) True G77207
TU88051 lncRNA downstream 123228 12918932 ~ 12919313 (-) True G77205
TU88048 lncRNA downstream 125868 12916431 ~ 12916673 (-) True G77202
TU88047 lncRNA downstream 128618 12913698 ~ 12913923 (-) True G77201
TU88098 lncRNA upstream 19140 13061905 ~ 13062333 (-) True G77243
TU88094 lncRNA upstream 39226 13081991 ~ 13083934 (-) True G77241
TU88109 lncRNA upstream 51515 13094280 ~ 13094498 (-) True G77254
TU88111 lncRNA upstream 54622 13097387 ~ 13097692 (-) True G77256
TU88216 lncRNA upstream 127378 13170143 ~ 13170470 (-) True G77348
CI01000012_13015424_13018020.mRNA mRNA downstream 22896 13015374 ~ 13019645 (-) True CI01000012_13015424_13018020
CI01000012_12977279_12978570.mRNA mRNA downstream 63724 12977022 ~ 12978817 (-) True CI01000012_12977279_12978570
CI01000012_12960774_12964242.mRNA mRNA downstream 77612 12959701 ~ 12964929 (-) True CI01000012_12960774_12964242
CI01000012_12954694_12954954.mRNA mRNA downstream 84708 12954460 ~ 12957833 (-) False CI01000012_12954694_12954954
CI01000012_12902396_12904687.mRNA mRNA downstream 136920 12902161 ~ 12905621 (-) True CI01000012_12902396_12904687
CI01000012_13085906_13090647.mRNA mRNA upstream 41352 13084117 ~ 13090653 (-) True CI01000012_13085906_13090647
CI01000012_13231532_13268248.mRNA mRNA upstream 188767 13231532 ~ 13268248 (-) True CI01000012_13231532_13268248
CI01000012_13277959_13281157.mRNA mRNA upstream 235012 13277777 ~ 13282518 (-) True CI01000012_13277959_13281157
CI01000012_13324234_13357963.mRNA mRNA upstream 281044 13323809 ~ 13357963 (-) True CI01000012_13324234_13357963
CI01000012_13374979_13384349.mRNA mRNA upstream 332045 13374810 ~ 13384349 (-) True CI01000012_13374979_13384349
TU87800 other downstream 86877 12954446 ~ 12955664 (-) True CI01000012_12954694_12954954
TU87842 other downstream 958281 12080546 ~ 12080752 (-) False G77017
TU87843 other downstream 958281 12080546 ~ 12083845 (-) True G77017
TU87807 other downstream 990334 12049044 ~ 12049222 (-) True G76984
TU86282 other downstream 2421670 10611915 ~ 10620871 (-) True G75608
TU88148 other upstream 576511 13619276 ~ 13633819 (-) True G77287

Expression Profile