RNA id: TU88109


Basic Information

Item Value
RNA id TU88109
length 219
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G77254
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 13094280 ~ 13094498 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGAAAATTAATCATGGTTAAAAGTGTGTTAACTATGATTTTTTTTGTCGGATTGATACTATTTGTATAACAATTTTACTATACAAAAAAAAAAAAAAAACTATGCCTTTTAGTCTGATGCCTTTTTGTCTGAGTCTGTTTCATCCGATGCTTTTTCGTCTGATGCATTTTATTCTGTGGCTGTTTCAATCGATGCCTAATTGTACGAGACCTGATGTCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88094 lncRNA downstream 10346 13081991 ~ 13083934 (-) True G77241
TU88098 lncRNA downstream 31947 13061905 ~ 13062333 (-) True G77243
TU88087 lncRNA downstream 51515 13042541 ~ 13042765 (-) True G77238
TU88086 lncRNA downstream 52058 13042013 ~ 13042222 (-) True G77237
TU88053 lncRNA downstream 172478 12921578 ~ 12921802 (-) True G77207
TU88111 lncRNA upstream 2889 13097387 ~ 13097692 (-) True G77256
TU88216 lncRNA upstream 75645 13170143 ~ 13170470 (-) True G77348
TU88217 lncRNA upstream 76638 13171136 ~ 13171361 (-) True G77349
TU88218 lncRNA upstream 78565 13173063 ~ 13173303 (-) True G77350
TU88220 lncRNA upstream 81349 13175847 ~ 13176084 (-) True G77352
CI01000012_13085906_13090647.mRNA mRNA downstream 3627 13084117 ~ 13090653 (-) True CI01000012_13085906_13090647
CI01000012_13041401_13060443.mRNA mRNA downstream 33837 13040652 ~ 13060443 (-) True CI01000012_13041401_13060443
CI01000012_13015424_13018020.mRNA mRNA downstream 74635 13015374 ~ 13019645 (-) True CI01000012_13015424_13018020
CI01000012_12977279_12978570.mRNA mRNA downstream 115463 12977022 ~ 12978817 (-) True CI01000012_12977279_12978570
CI01000012_12960774_12964242.mRNA mRNA downstream 129351 12959701 ~ 12964929 (-) True CI01000012_12960774_12964242
CI01000012_13231532_13268248.mRNA mRNA upstream 137034 13231532 ~ 13268248 (-) True CI01000012_13231532_13268248
CI01000012_13277959_13281157.mRNA mRNA upstream 183279 13277777 ~ 13282518 (-) True CI01000012_13277959_13281157
CI01000012_13324234_13357963.mRNA mRNA upstream 229311 13323809 ~ 13357963 (-) True CI01000012_13324234_13357963
CI01000012_13374979_13384349.mRNA mRNA upstream 280312 13374810 ~ 13384349 (-) True CI01000012_13374979_13384349
CI01000012_13459355_13464706.mRNA mRNA upstream 364163 13458661 ~ 13465823 (-) True CI01000012_13459355_13464706
TU87800 other downstream 138616 12954446 ~ 12955664 (-) True CI01000012_12954694_12954954
TU87842 other downstream 1010020 12080546 ~ 12080752 (-) False G77017
TU87843 other downstream 1010020 12080546 ~ 12083845 (-) True G77017
TU87807 other downstream 1042073 12049044 ~ 12049222 (-) True G76984
TU86282 other downstream 2473409 10611915 ~ 10620871 (-) True G75608
TU88148 other upstream 524778 13619276 ~ 13633819 (-) True G77287

Expression Profile