RNA id: TU88184



Basic Information


Item Value
RNA id TU88184
length 3997
lncRNA type intronic
GC content 0.39
exon number 2
gene id G77316
representative True

Chromosome Information


Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 13248531 ~ 13252554 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GGATTTAATCAAAATATCTTAATTTGTGTTCCGAAGATAAACGAAGGTCTTACGGGTGTAGAACAACATGAGGGTGAGTAATTAATAACATTATTTTCATTTTTGGGTGAACTAACCCTTTAAGGTGTTTTGGGTTGATCAGCTTGTTCTTCTTAACTGTTATTATCGGACTCGAACTGATGTGGCGGAACTGACGCCATAATTAGAGTATACAGTAGTGTTTACCGCAGCTGATACACTTTAAGTGGTAGACCAGTCATAACAGACAGGGGCCAGCTTTTGGAAGGCGGGTTTTAAAGAAGTTAAAACAGCGTTCAGACAGAGGGTGAAAACAGGTGCTGCAACAATGTAAATTGTTAGAAAAATAATGAGTTTTTTTGAACATTAAATGACTTGAACCTATTTTAGTAGACCCCATAAACAAAAAAAATTATGAAACTGTAAATGAGCATAATTGGACCCCTTTAATGACTCTTTAGCTGAAACTGTAGATTATATTCAGTCATTGTAAATTGGCAGTAGATTGTGCCTGTGTCCCTCAAGAATTCCTGTTCCAATTTTTGATGTGATGAGATGCACCAAAAATAGATTAGTATACTATTGTTTTTTCATGACAAATAAGTATAAGCATTTTGCCGAATGAAAGTGCACAATAAAAAAGGACTTAGATAACTATAGAGGAGCAATTTGCATAAATTTGCATCTGTTGAGATTGGGACAGCAGAAGAGAAATGTTCTAGAACAGAACTCTTAGTGCCCCACAAAATGAAATTCAGAATTAAGTACACAATGCATTAGAGTAGGAGACAGATTTTAAACGCTTAGGACTCTTTCTGAGAAAGTTTAAATTAACAAGCAAAGCTGGTCTTAGTGCAGGGATTCTCAACCTTATTTGGTCTGTGACCCATTTTTAAGTTCCAAAATTGTTGAAACCCCACATCAGAGAATTAAGACACTTGATCTCACAGGCTTAATTCCCCGTAAAAAAGAAGGTTTATGATACCTGGAGTAGGTATCCACTGGCATTCCCATTAATGTCTATGGCAATATTAAATGTTATTTTATTTATGTATATATATAGTGTATTTAAACCAAACCCAACATACCAAATTTCACCTATGCTTTTGCAGGGTAATTAAATATTAGTGATTATATTTGTTCCTTGAAAGAAAGAAAAATTTCATGTTACTAATGTTAACCCTCAATGGTGAAATATGCTTTTTGTCTGCATATTTGGTAGTTACAGCATACATGACGAATCAACAAAAATGTCTCCGATAGGATGACTGCCAGTATGTGATGATGGTAAAATGTGTCTGGTGGTGATCGTGCCAATATGAAACTGATCAAGAGCTCAGTGGTCTTGAATGGCTTCTGAAAAGGTTTTGACAGAGAAATCAATGTAATGCACATCAGTGGGCGCCAAGCGCAGGTGAAGGTCCCTGTCAAAGGGACTCATGTGTGAAAAGTCATTTGTTCAGCCAGCCACACACACACTCTAAACTCACTGCGGGCTTCAAAAATAAGTGATTCTGCATGACAGCACAGTGAATAGCCATCCGGGCTTTTTCAGTTATCAATAAACACTGCAGTGGATGCTTTCCCAGGATTTTCGCAGTGTTTTCAGACGTACACATTGATCCGGGCTCTGGAAGTGTGGGTTAGTGATCTAGTCTCCATCACAACAGCACACCATGTGTACTTTCTTAGAAGTCACATTTGCTCATAATAAGCCAATGCGGTTTGACACTTATGCCTCCGGTTGTCAGGTTTATCATCCTCAGCCTGTCAGTGCTGCATAATGCCCATCATTCTGTGGCCTGCCTCTGCCGGGGACTGTGAGGGACAGCTTGCATCGCTTCAAACCTCATCCAGCACTGAACTGTGCCCCCTAATAAAGCCTAAATTGCCCACCATGGAGCAGGAGAGTGACTCCAGACATTCATTAGCTTAATGAAAACAGGCCACTCCACTGCAGCCGCCCAGTGAGCATCTTCACACTGTAGCTGAGGCAACCATCTGCTCCGAGGCACCCAGCCAGCTGCAGAGTATTCCTGTCATACACACCCCATTGGAGGGGATGCAAACGGCACACCTCCACTCCGAGAGAGATGGTCATCAAGCTTTGGCGCAGTGCTGCAGTGTTGCTAAATATACTGCCCTACCCACACCTCACCCTTTCACCTGAAACTGTTTGCATTTGCTTTGTGGCTCCGGCCAAATTCAGTGACGGTTCTTCTGCATTTTGCCAGTTAGAGTTCCCTACAGCTGCATCTACAGCCTGGCTGGGAAGAGCATGTGTTGAGGAGTTTCCAGCCATGTGCTAGGCAGGGTATGTCAACATGTGTTATAGCCAACTGTTTCATTCTGGCCACCACAAATCAGCTCACCTTTGCAAATATTTGAAGGGCAAATTCCCTTCCCTTAGTAATGTCTGACTTACTGGTCTGGAAACTAACAACAAATAGTAAACAGCCATTTCTACAAAATAATGCAACTGTACAAATGTGTTCCACACAGAATGCTTCATTTATGATATAGTTAGGGATCATCACGATTGTTGACTAGCCATACGCAGCCTATATTTATGTAGTTAGTTGATTAGTTAGTAAAATTCAGTAAACTCTTGCAGAGGTTTTGCATCTCTACAGCCATGCACACAAAGAAATTTTGCCCATTTCGGGACATTTTTTTTATCCTGTTATATATATGAATATATATATTAGGGGTGTAACGGTACACAAACAAGACGATTCTGTACGTACCTTGGTTTTGAAGTCACGGTTCGGTACTGGTTCAGTACAGTAGGGGGGAGAAAACTAAACAAAATTACTTTTTTATTAAACTGTTTTTTGAACAAATATTCAATTATAATGACAATTTTCTTAAGGTTAAAATGGCTAATGCTGCAGTAGTCAACATTTGAAGTGGATCAAAACCTTTTCAAAGTTGTCCTAAAACCTTCTTCTTAAGACAACTTAGTCTTTAAGACAACTTTGATGAACTTTTTTGATCCACTTCAAATGTTGACTACTATATAGGGAGCCATTACTTACACGTTACTATAATATTAAAGGGGACCTATTAAGCAAAATTCACTTTTACATAGTGTTTGAACATAAATGTGTGTTGGCAGTGTGTGTACACAGCCACCCTATAATGATAAAAATCCACCCACTCCTTTTTTCAATGCCCCCCAAAAAATAAACAGTCTCAATTAACAAGCCGTTTTGATTTTCTGAGCAGCCACGACTGCTGACAGACAGAGCAGTATTAGCATAGTTTTCTCCTTGAGCCAGTTGTACACAATGTCTGCCATTTTCTCTACGCCAGATAGGGTTGGGAACCGAGAACCGGTTCTCATCCGGAACCGGTAGTGTTTTTTTTAAAAGAACCGGAACCGTGCAAGATTTCCAAATTTAGGTTCCGAAAACGGTTCTGGTGCGATGGGTGGGCGAATTGCGGGGAGCGTGTCCTTTAATAGAGACATCTCACATCATGAATATTATAGCAATGAATGCACTGAAAATCCCTCGCGCTACTCATATACGTCAGATTACAATGCAGAGAGAGAGAGAGAGAGAGAGAGAGGTGCCCAAAGCTGCACGATTAATCTTTAAAAGATCGCGTTCTCGATTTCATCAACCACATGATCTAATTCCTAAATGACAACGATTCGCCCGTGTATATTAAACCTTTGACAAAACTAAAATCGCGACATTCAAATCTGAGTTTGCGCTGCCGTTGATCTAAAGAGAGTTGTCATGTGTAGATATAAACAGCTTCACAAACAATCTTTTCAAACGCACATTATTTCTGTGTGACAAACAGGCCTATTCCAATTATAACAGAAGTATACAAAAGTTTATTATTCAGATAGAAACGCTGATGTTTATGTATAATAAATTATCTTCTGAAAGTAACTGTACTTCAAATAACGACTGTATCGATTGCATTGTTTTTATGAATCCAACTTATAAAAATATTCTGTTTCACC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU88222 lncRNA downstream 68263 13180040 ~ 13180268 (-) True G77354
TU88221 lncRNA downstream 69960 13178327 ~ 13178571 (-) True G77353
TU88220 lncRNA downstream 72447 13175847 ~ 13176084 (-) True G77352
TU88218 lncRNA downstream 75228 13173063 ~ 13173303 (-) True G77350
TU88217 lncRNA downstream 77170 13171136 ~ 13171361 (-) True G77349
TU88138 lncRNA upstream 151817 13404371 ~ 13408213 (-) False G77282
TU88139 lncRNA upstream 152916 13405470 ~ 13408213 (-) True G77282
TU88154 lncRNA upstream 199452 13452006 ~ 13453470 (-) True G77289
TU88261 lncRNA upstream 232509 13485063 ~ 13485319 (-) True G77393
TU88183 lncRNA upstream 232982 13485536 ~ 13486220 (-) True G77315
CI01000012_13085906_13090647.mRNA mRNA downstream 157878 13084117 ~ 13090653 (-) True CI01000012_13085906_13090647
CI01000012_13041401_13060443.mRNA mRNA downstream 188088 13040652 ~ 13060443 (-) True CI01000012_13041401_13060443
CI01000012_13015424_13018020.mRNA mRNA downstream 228886 13015374 ~ 13019645 (-) True CI01000012_13015424_13018020
CI01000012_12977279_12978570.mRNA mRNA downstream 269714 12977022 ~ 12978817 (-) True CI01000012_12977279_12978570
CI01000012_12960774_12964242.mRNA mRNA downstream 283602 12959701 ~ 12964929 (-) True CI01000012_12960774_12964242
CI01000012_13277959_13281157.mRNA mRNA upstream 25223 13277777 ~ 13282518 (-) True CI01000012_13277959_13281157
CI01000012_13324234_13357963.mRNA mRNA upstream 71255 13323809 ~ 13357963 (-) True CI01000012_13324234_13357963
CI01000012_13374979_13384349.mRNA mRNA upstream 122256 13374810 ~ 13384349 (-) True CI01000012_13374979_13384349
CI01000012_13459355_13464706.mRNA mRNA upstream 206107 13458661 ~ 13465823 (-) True CI01000012_13459355_13464706
CI01000012_13512129_13512368.mRNA mRNA upstream 259526 13512080 ~ 13512368 (-) True CI01000012_13512129_13512368
TU87800 other downstream 292867 12954446 ~ 12955664 (-) True CI01000012_12954694_12954954
TU87842 other downstream 1164271 12080546 ~ 12080752 (-) False G77017
TU87843 other downstream 1164271 12080546 ~ 12083845 (-) True G77017
TU87807 other downstream 1196324 12049044 ~ 12049222 (-) True G76984
TU86282 other downstream 2627660 10611915 ~ 10620871 (-) True G75608
TU88148 other upstream 366722 13619276 ~ 13633819 (-) True G77287

Expression Profile