RNA id: TU87346


Basic Information

Item Value
RNA id TU87346
length 465
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G76565
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 13372080 ~ 13372544 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTTAGTACCTTTATGGATCTCAAGAGTCAAGAGTGCATCGCATAATATCTGTGAAGGAGCTTTCACAGGACGCCTTACAACGTTTCTATTAGCCTAATTCGCGCATTAAGTAATTTAATGCTCATATATTTTAAAACTTTGAATCGCTATTTATTCGATTCTTAGCACTTTAAATCGATTTTTGACCGAAATCATCGTCAGGATCTATCAATGTATCGAGAAAACTAGTGAATCGTTACACCCTTAATACTCATTCTCAGCAGGTAATATGTGCACTTGCCAAACACCTCCGCTAGAGGCCAATGTTTACCAATGGAACCTTGTAAATCGAGCTAGCAGGGGTTCTCAACTCTGGTCCTCGAGGTCCACTTTCCTGCAGCGTTTAGCTCCAACCATGATCAAACTCACCTGCCTATAACTTTGTTCAAGTGTGTTTGATTAGGGTTGGAGCTAAACTACAGTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87299 lncRNA upstream 154921 13216935 ~ 13217159 (+) True G76519
TU87298 lncRNA upstream 159511 13212340 ~ 13212569 (+) True G76518
TU87297 lncRNA upstream 160370 13209832 ~ 13211710 (+) True G76517
TU87296 lncRNA upstream 162440 13209299 ~ 13209640 (+) True G76516
TU87294 lncRNA upstream 163482 13208349 ~ 13208598 (+) True G76514
TU87347 lncRNA downstream 13892 13386436 ~ 13386644 (+) True G76566
TU87348 lncRNA downstream 14504 13387048 ~ 13387378 (+) True G76567
TU87350 lncRNA downstream 16309 13388853 ~ 13389153 (+) True G76569
TU87352 lncRNA downstream 68810 13441354 ~ 13441664 (+) True CI01000012_13442338_13442897
TU87368 lncRNA downstream 112977 13485521 ~ 13486220 (+) True CI01000012_13471010_13484053
CI01000012_13291350_13311094.mRNA mRNA upstream 59924 13291350 ~ 13312156 (+) True CI01000012_13291350_13311094
CI01000012_13102619_13168566.mRNA mRNA upstream 203514 13102619 ~ 13168566 (+) True CI01000012_13102619_13168566
CI01000012_13063943_13081607.mRNA mRNA upstream 289513 13062843 ~ 13082567 (+) True CI01000012_13063943_13081607
CI01000012_13029637_13033226.mRNA mRNA upstream 338355 13029435 ~ 13033725 (+) False CI01000012_13029637_13033226
CI01000012_12930929_12947409.mRNA mRNA upstream 424671 12930929 ~ 12947409 (+) True CI01000012_12930929_12947409
CI01000012_13391082_13401374.mRNA mRNA downstream 18538 13391082 ~ 13401692 (+) True CI01000012_13391082_13401374
CI01000012_13404454_13437477.mRNA mRNA downstream 31910 13404454 ~ 13437722 (+) True CI01000012_13404454_13437477
CI01000012_13442338_13442897.mRNA mRNA downstream 68309 13440853 ~ 13443219 (+) False CI01000012_13442338_13442897
CI01000012_13445338_13452629.mRNA mRNA downstream 72311 13444855 ~ 13452629 (+) True CI01000012_13445338_13452629
CI01000012_13471010_13484053.mRNA mRNA downstream 98466 13471010 ~ 13486012 (+) False CI01000012_13471010_13484053
TU87240 other upstream 333181 13015506 ~ 13023794 (+) True G76462
TU87131 other upstream 622911 12745531 ~ 12749169 (+) False G76374
TU87145 other upstream 696414 12630755 ~ 12675666 (+) True G76385
TU86153 other upstream 2226341 11144817 ~ 11145739 (+) True G75533
TU85876 other upstream 3147793 10221955 ~ 10222037 (+) True G75291
TU87436 other downstream 279315 13651859 ~ 13652234 (+) True G76645
TU87448 other downstream 330943 13703487 ~ 13718704 (+) False G76656

Expression Profile