RNA id: TU88261


Basic Information

Item Value
RNA id TU88261
length 257
lncRNA type antisense_over
GC content 0.50
exon number 1
gene id G77393
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 13485063 ~ 13485319 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GACGGAAAATGAAAAGTTGCGATTTTCTAGGCCAATATGGCTAGGAACTATACTCTCATTCCGGCGTAACAATCAAGGAAATTTGCTGCCGTACCATAGGTGCAGCAGGCGCAATGATATTAAGCAGCGCCTGTGACCCCCTGCTTGCACAGGGGGCGTGCCTTGCAACCATGGAGACATTTGTAAGAGACGCTACGCAATATCATTGCGCCTGCTGCACCCCATGGTACGGCAGCAAAGTTCCTTGATTATTACGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88154 lncRNA downstream 31593 13452006 ~ 13453470 (-) True G77289
TU88138 lncRNA downstream 76850 13404371 ~ 13408213 (-) False G77282
TU88139 lncRNA downstream 76850 13405470 ~ 13408213 (-) True G77282
TU88184 lncRNA downstream 232509 13248531 ~ 13252554 (-) True G77316
TU88222 lncRNA downstream 304795 13180040 ~ 13180268 (-) True G77354
TU88183 lncRNA upstream 217 13485536 ~ 13486220 (-) True G77315
TU88276 lncRNA upstream 65933 13551252 ~ 13551585 (-) True G77407
TU88278 lncRNA upstream 68155 13553474 ~ 13553762 (-) True G77409
TU88295 lncRNA upstream 95515 13580834 ~ 13582731 (-) False G77423
TU88296 lncRNA upstream 95515 13580834 ~ 13585383 (-) True G77423
CI01000012_13459355_13464706.mRNA mRNA downstream 19240 13458661 ~ 13465823 (-) True CI01000012_13459355_13464706
CI01000012_13374979_13384349.mRNA mRNA downstream 100714 13374810 ~ 13384349 (-) True CI01000012_13374979_13384349
CI01000012_13324234_13357963.mRNA mRNA downstream 127100 13323809 ~ 13357963 (-) True CI01000012_13324234_13357963
CI01000012_13277959_13281157.mRNA mRNA downstream 202545 13277777 ~ 13282518 (-) True CI01000012_13277959_13281157
CI01000012_13231532_13268248.mRNA mRNA downstream 216815 13231532 ~ 13268248 (-) True CI01000012_13231532_13268248
CI01000012_13512129_13512368.mRNA mRNA upstream 26761 13512080 ~ 13512368 (-) True CI01000012_13512129_13512368
CI01000012_13516097_13520943.mRNA mRNA upstream 30200 13515519 ~ 13520943 (-) True CI01000012_13516097_13520943
CI01000012_13538979_13549803.mRNA mRNA upstream 53360 13538679 ~ 13549803 (-) True CI01000012_13538979_13549803
CI01000012_13590555_13590800.mRNA mRNA upstream 105203 13590522 ~ 13590800 (-) True CI01000012_13590555_13590800
CI01000012_13593620_13605408.mRNA mRNA upstream 108282 13593601 ~ 13605988 (-) True CI01000012_13593620_13605408
TU87800 other downstream 529399 12954446 ~ 12955664 (-) True CI01000012_12954694_12954954
TU87842 other downstream 1400803 12080546 ~ 12080752 (-) False G77017
TU87843 other downstream 1400803 12080546 ~ 12083845 (-) True G77017
TU87807 other downstream 1432856 12049044 ~ 12049222 (-) True G76984
TU86282 other downstream 2864192 10611915 ~ 10620871 (-) True G75608
TU88148 other upstream 133957 13619276 ~ 13633819 (-) True G77287

Expression Profile