RNA id: TU88276


Basic Information

Item Value
RNA id TU88276
length 334
lncRNA type antisense_over
GC content 0.50
exon number 1
gene id G77407
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 13551252 ~ 13551585 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTCTGGTCCTCCTGACAGAATAGTTTCAGCTCCTCCCCATGCTCCTTACACTTGAAGGAAATCAAGTCCTCTGTCACTTCGATGAGAGAGTGCCCTCTTAAAGCCTCTCTCTGCTGGTGCAGGAGAGTGTGAGCAGAGCACAGGGAGGCGTCGCAGGTGAGGCAGCTCTTTACAGCCACCTCAGTCTTCCCAATGCACTGATCACACATGATAATGGAGTGTGACATACGAGATGATCCTTCCAGCGAAGGTGCTCTTGAAAAGACATCCTGAACTTTCCTTTGAAGATCTGAGTTGATCTCAAGCTTAAGGTCAGAAGGAAGGAGGATCTGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88183 lncRNA downstream 65032 13485536 ~ 13486220 (-) True G77315
TU88261 lncRNA downstream 65933 13485063 ~ 13485319 (-) True G77393
TU88154 lncRNA downstream 97782 13452006 ~ 13453470 (-) True G77289
TU88138 lncRNA downstream 143039 13404371 ~ 13408213 (-) False G77282
TU88139 lncRNA downstream 143039 13405470 ~ 13408213 (-) True G77282
TU88278 lncRNA upstream 1889 13553474 ~ 13553762 (-) True G77409
TU88295 lncRNA upstream 29249 13580834 ~ 13582731 (-) False G77423
TU88296 lncRNA upstream 29249 13580834 ~ 13585383 (-) True G77423
TU88297 lncRNA upstream 33921 13585506 ~ 13587552 (-) True G77424
TU88320 lncRNA upstream 173312 13724897 ~ 13726271 (-) True G77447
CI01000012_13538979_13549803.mRNA mRNA downstream 1449 13538679 ~ 13549803 (-) True CI01000012_13538979_13549803
CI01000012_13516097_13520943.mRNA mRNA downstream 30309 13515519 ~ 13520943 (-) True CI01000012_13516097_13520943
CI01000012_13512129_13512368.mRNA mRNA downstream 38884 13512080 ~ 13512368 (-) True CI01000012_13512129_13512368
CI01000012_13459355_13464706.mRNA mRNA downstream 85429 13458661 ~ 13465823 (-) True CI01000012_13459355_13464706
CI01000012_13374979_13384349.mRNA mRNA downstream 166903 13374810 ~ 13384349 (-) True CI01000012_13374979_13384349
CI01000012_13590555_13590800.mRNA mRNA upstream 38937 13590522 ~ 13590800 (-) True CI01000012_13590555_13590800
CI01000012_13593620_13605408.mRNA mRNA upstream 42016 13593601 ~ 13605988 (-) True CI01000012_13593620_13605408
CI01000012_13608026_13615552.mRNA mRNA upstream 56434 13608019 ~ 13615566 (-) True CI01000012_13608026_13615552
CI01000012_13634251_13634759.mRNA mRNA upstream 82418 13634003 ~ 13634759 (-) True CI01000012_13634251_13634759
CI01000012_13640633_13647067.mRNA mRNA upstream 87542 13639127 ~ 13647092 (-) True CI01000012_13640633_13647067
TU87800 other downstream 595588 12954446 ~ 12955664 (-) True CI01000012_12954694_12954954
TU87842 other downstream 1466992 12080546 ~ 12080752 (-) False G77017
TU87843 other downstream 1466992 12080546 ~ 12083845 (-) True G77017
TU87807 other downstream 1499045 12049044 ~ 12049222 (-) True G76984
TU86282 other downstream 2930381 10611915 ~ 10620871 (-) True G75608
TU88148 other upstream 67691 13619276 ~ 13633819 (-) True G77287

Expression Profile