RNA id: TU87452


Basic Information

Item Value
RNA id TU87452
length 430
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G76656
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 13703487 ~ 13739731 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGAACTAATGAATCACTGTCTATCTGGTCAAGATTTTGGGTTCTTACCCTAGAAACGGTGAGGGGCATGTTGAAGTCCTTGCCTCCTTGCAACCGGAAGCCCCAAGGCGAAGGTCCAGCGAGTGATACGTTGTAAGAACTCATTGTTCAAAAAAGCTTGTGTATTGTTTAAGCAACAGAATTTCTCCAAAATTATGGGGAAAATGGATTGGGAGGGGGCGGGGCACGTGCCAAACAGCCTCCAAATACAATGCAAAATAACTGGAGCAACAGAGAAGAGCTATCAGCCAGAGGAAGAGGATTTTTGCCTGCTCGGATGAGCTGGACAGACAGCCTAAGAATAGCTGCCCCTCTGCCGAGAGCGATAGCACTATGGCATTGAGGGGAGGGAGGAGGAAGGGGTACTTATATGGCATGTAAGGGGACACCCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87453 lncRNA upstream 37409 13698887 ~ 13701764 (+) True G76657
TU87369 lncRNA upstream 145905 13591499 ~ 13593268 (+) False G76584
TU87370 lncRNA upstream 145905 13591871 ~ 13593268 (+) True G76584
TU87418 lncRNA upstream 181486 13557425 ~ 13557687 (+) True G76630
TU87417 lncRNA upstream 182943 13555993 ~ 13556230 (+) True G76629
TU87465 lncRNA downstream 5186 13744917 ~ 13745623 (+) True G76669
CI01000012_13653033_13672573.mRNA mRNA upstream 66185 13653033 ~ 13672988 (+) True CI01000012_13653033_13672573
CI01000012_13619458_13633023.mRNA mRNA upstream 105372 13619009 ~ 13633801 (+) True CI01000012_13619458_13633023
CI01000012_13559514_13590448.mRNA mRNA upstream 148680 13559514 ~ 13590493 (+) True CI01000012_13559514_13590448
CI01000012_13551086_13554035.mRNA mRNA upstream 184861 13550773 ~ 13554312 (+) True CI01000012_13551086_13554035
CI01000012_13533459_13538332.mRNA mRNA upstream 200730 13533390 ~ 13538443 (+) True CI01000012_13533459_13538332
TU87448 other upstream 20469 13703487 ~ 13718704 (+) False G76656
TU87436 other upstream 86939 13651859 ~ 13652234 (+) True G76645
TU87240 other upstream 700274 13015506 ~ 13023794 (+) True G76462
TU87131 other upstream 990004 12745531 ~ 12749169 (+) False G76374
TU87145 other upstream 1063507 12630755 ~ 12675666 (+) True G76385

Expression Profile