RNA id: CI01000013_01629280_01635701.mRNA



Basic Information


Item Value
RNA id CI01000013_01629280_01635701.mRNA
length 789
RNA type mRNA
GC content 0.48
exon number 4
gene id CI01000013_01629280_01635701
representative False

Chromosome Information


Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 1629228 ~ 1635772 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GAATAAAAATATCACATGATGAGTGTCTTCACGCACATCAACAACATAAACCATGTTGGAGATAAGTACTATTGCTGCTATGTACCTGTTGTGGAAGTCCCAAATACGCCAGAAAGCCAAACGCCAACGTGCACCATCCAGAGAATACACAGGAGATGTGACTGCAAAGATATTTGCTGCACAGATTGACTGCTTTATTCCATATGCCATGCCTGAGCAGCTTTTGCTGGAATCAGCCCCAGCTTCCCAGAACCCAAGGCCTCATGGAGGAATCTATGAAATTGCCCCTGATCTCAAAGCCCATCGCCTCACGACCCAACCTGCTGCTGTGCAACAATGCTCATATTCACAGCCTTCAGACAGCAAATTGCTTCTCTCATTCCTCACCACGCCCTGTGCTCTCAGCCACCTGCAAAACGAACCCTGCTGGAAATTTCACTACAAATTACCCTGTGTCTACTCAATCCCCCTGGGAGAAGAAAACCCCCTATTCTCTCCAGCGCCCGTAGTAATCATGCTTATCAAACACACATACATGCATAACAAAGAAAGGGGTGGTCCTGTCAGCCCCAGTCTGTGCTGCAGCAGCCGAGACACAGACGGAGAGAAGGCACAGGGCCAAAGCTATGGGGCCTGGAGCAGGATCACAGCAGAGAGTGTTTCTGTGAGCTGTGCCTGTGAGATGAAGCTTTCAGGTTGTGAGATCACATGGGACTGAGTCTAAGCAGCTGTTGAACAAACGCTAATACCATTTTTTTCTTTCTTCCTGGTCTTTTGATTTTTAACGCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU88916 lncRNA upstream 9375 1619615 ~ 1619853 (+) True G78010
TU88887 lncRNA upstream 12224 1616704 ~ 1617004 (+) True G77981
TU88914 lncRNA upstream 15452 1613509 ~ 1613776 (+) True G78008
TU88852 lncRNA upstream 98653 1530320 ~ 1530575 (+) True G77946
TU88835 lncRNA upstream 123118 1505883 ~ 1506110 (+) True G77929
TU88935 lncRNA downstream 6797 1642569 ~ 1643119 (+) True G78028
TU88939 lncRNA downstream 14796 1650568 ~ 1650776 (+) True G78032
TU88982 lncRNA downstream 69621 1705393 ~ 1705660 (+) True G78073
TU89033 lncRNA downstream 151771 1787543 ~ 1787793 (+) True G78124
TU89140 lncRNA downstream 293708 1929480 ~ 1929832 (+) True G78231
CI01000013_01443540_01469011.mRNA mRNA upstream 160152 1443540 ~ 1469076 (+) True CI01000013_01443540_01469011
CI01000013_01405290_01429838.mRNA mRNA upstream 198915 1405290 ~ 1430313 (+) False CI01000013_01405290_01429838
CI01000013_01335438_01381270.mRNA mRNA upstream 247958 1335438 ~ 1381270 (+) True CI01000013_01335438_01381270
CI01000013_01275415_01295230.mRNA mRNA upstream 333904 1275122 ~ 1295324 (+) True CI01000013_01275415_01295230
CI01000013_01220794_01229752.mRNA mRNA upstream 398270 1220794 ~ 1230958 (+) True CI01000013_01220794_01229752
CI01000013_01762491_01764612.mRNA mRNA downstream 125986 1761758 ~ 1764805 (+) True CI01000013_01762491_01764612
CI01000013_01950237_01964249.mRNA mRNA downstream 314243 1950015 ~ 1964290 (+) True CI01000013_01950237_01964249
CI01000013_01989323_01993472.mRNA mRNA downstream 352759 1988531 ~ 1994075 (+) True CI01000013_01989323_01993472
CI01000013_02033469_02034368.mRNA mRNA downstream 397343 2033115 ~ 2034738 (+) True CI01000013_02033469_02034368
CI01000013_02081079_02127936.mRNA mRNA downstream 444894 2080666 ~ 2128269 (+) True CI01000013_02081079_02127936
TU88574 other upstream 676259 946521 ~ 952969 (+) True G77695
TU88411 other upstream 919679 708833 ~ 709549 (+) True G77533
TU90328 other downstream 830993 2466765 ~ 2467171 (+) True G79309
TU91155 other downstream 1948236 3584008 ~ 3584784 (+) True G80062
TU91262 other downstream 2429161 4064933 ~ 4065829 (+) True CI01000013_04051081_04064651
TU92027 other downstream 3199306 4835078 ~ 4836232 (+) True G80845
TU92951 other downstream 4420526 6056662 ~ 6056782 (+) True G81681

Expression Profile