RNA id: CI01000013_02081079_02127936.mRNA


Basic Information

Item Value
RNA id CI01000013_02081079_02127936.mRNA
length 2543
RNA type mRNA
GC content 0.49
exon number 13
gene id CI01000013_02081079_02127936
representative True

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 2080666 ~ 2128269 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATATAAATTAGAACAGAAGAATTCTTGTTGCTGGCAAATGTCAAAATGATATCCTCAAAGTAATTGCGGGACAAGAAGGTGAACGCCACAAAACCCACATGCAGACCCCCAAAAAAGGACAAATTAGGCTGACTCCTGCAAGTGACCCCTACAAACTCGATGTGACATAAAGGAAAAAGCATTAAACAAACATCTGACTGGCCATTTCACATTCACTGTGTATAGAACCGATAAAATACTGAGGTTACTCTTTTATAGTACACTTCTCTTTATCAGAATAACGCACTAACAATACTCTTCCTCTCTTTTACAGACTCCTGTTTTTTGTAGACTTTTTTTCTTTCATAAGCCATCACAGTTTGTCATTGTTCTCCAGAGGCGAGCTGTCTGAAGCAGTATAGTGCTGTGCGGAGATGGCCTGGCTGGGCGACTGGGTTGTGGTGCCGGCCTGTCTCTGTGAGAGTGGAGCCCAGGCTCTTCCCACGTGGTGGCCCCTGCCTAGCGCCCTGCCCCCCTCCTCTGTCTCACCGCCAGGGCTGTGGGTGCCACTGGCACCAGGGTTGCGGAGGAGGTGCATCTTCACTATGCGGGTCAGTGACTGTATTGAAAAGGACATAAAGCTAGCAGCAGAGACCCTAAAGACCTCTCGGTATCTCAGGGACCGGCCTGTGTCAAACTTCAGGCGAACAAAGAAAACCCAGCCCGAGCCATTAAGAGAGTCCAGACAAAGAGCCATCTCTAGCCTCTCACACCTTGATCACGGACAAGTGGCTTCCCCCGTGCCTCTATCTCGCACTCTGCCGCCGGTGTCAGAAACGCTGCCGTTCCCGGCAAGCAAAGTGCGTATCAAAGTAAAACGGCTATCTTTCAAAGCCAGCCTGAGCTACATCTGTTCATGCCTCCCTGGGACACCCAAGTGGTTAGCTGGATTGAAACATCACCTTGAGGTTCCATTTGTTTTCTCTGGAGAGGTCAGCTCTGGGTCATCATTAGGACTGAACTTGATCCTCCTCAACATGAAGAGAGATCAGTGGCAACCACAGTATCCGAGAAACCACCTTGTGTGCAGCCCAAACATATGGGCCAGCCAGCGGTGGGTAGAGCTGGGTGTCTGTGGCACCGGGGGTGGGGGAGTGGTGGGAGAGAGGACCATCCACACCCTCTCAGCGGGTCTGGAAAATCGAGGTGGGCAGCTTATATGGCGGGCTGCTGCGTTTTTCTGGGTCCCCCAGCTGGAGGATGTCCAGGCCCTTTTGAGACAGAGCGGTGAAGGCGAAGACCACGTTCCACAGTACTGTCACTGTCTATGTCACAGTTCAGCGCCTGGGTCATCAGGGGCCCGTAGAGGTGTGACCGGTCTGAACACTGATGCTGGCCAAATGGCAGCATCAATCTCTCGTCAGCTGTCAGCGTTGAAGTGTGGGGTCAAGGCTGGAACATGTCAAGATGAAAGCCACCTCTCCCCATGCGCTTTCAGTTCGGACAGTTGTATGTGGGAACTGACACCAGGTCTGCTGTTACCTGCTCTCTGCACACCTCACCTCATCTCCCTGCATCATCACACTCACCCCCCAGCCAGAGAACAGGACTTTAATAGGGCTCTCGCAGGTGTGGGGTCCATAAGAAGCCAATGGATTGTGACGAGCACCTCTGAAGACTGCTTGACACTCTCCCAATCTGGGGCTGATAAAGGGAGGGGCACTGGTGGGGGTGCGGTGGCGTACAGGACGCTCTTAGAATTCCGCCACGGCCATATTCGGCGCTTCACGGGGCTTGGGAATGTTTTTGGAGTAGTCCTTGAACTTGTCATGCTCTGGCATCAGTGGAGGAAAAAAGGAGGACAAAAATGCGGAGAACACAGAGAGAAGGCACAGTTCATGTGTAGACACAACAGAACCTCACCTGAACAGAAGAAGAAAGCGACGAGGGTTGTGAAAAGGTGCAGCGTTGTGTACGAAGAGCGTTCCAAGCGATTCGCAGAAAATGGATTTGTTTTGACATGCATATGCGGCCGTTTCAAAAATGACCGTGAACTCGATTGCACGCTCGCTGTTTATTACAGCAACGTGGGGAGAGTGATTGAGCTCCCAAGACCACGATCCCTTCTGGGTTCTTCTGAATTGAATTTGCTGGCTCTTAGAAGCCTCTGCCCATCTCCCAATAGCGTATCCGTTGGCTGGGAAACTCCAGTTCTAAGTTCACTATGCTGAACCCTTTGGCTCTTTTACTGTGCTGTAAAGCTGTCAGCTTTGTGATCAAGAAGACCCATGTTTCCAAAGCAGGTTATAAAACACTTACCTCTCTAATAATTTATTTAAAACCTCTTGAACCAAGTTCAAGAATATGGACACTTTTTTTTTTTTAATTAGAGATCATTGATGTATGGTTTGGTTTTAAATATCTTCCCAAATTTTAAAATGTAAAAACAGAAAGTAGGAAATCAACTGTTAAAAATGACTGGAGCTTAATCGTTTTTTTTTTTTTTTCAACACATCTCAAGCTTTAGCTGGTACTAAACACGTGTGATTTTAAAAATTGCAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89176 lncRNA upstream 100592 1979842 ~ 1980074 (+) True G78265
TU89175 lncRNA upstream 101137 1979275 ~ 1979529 (+) True G78264
TU89174 lncRNA upstream 101938 1978383 ~ 1978728 (+) True G78263
TU89171 lncRNA upstream 105285 1975060 ~ 1975381 (+) True G78260
TU89165 lncRNA upstream 115243 1965163 ~ 1965423 (+) True G78254
TU90080 lncRNA downstream 2249 2130518 ~ 2130751 (+) True G79075
TU90249 lncRNA downstream 175048 2303317 ~ 2303695 (+) True G79232
TU90259 lncRNA downstream 188461 2316730 ~ 2316943 (+) True G79241
TU90199 lncRNA downstream 243461 2371730 ~ 2385188 (+) True G79185
TU90209 lncRNA downstream 291252 2419521 ~ 2420107 (+) True G79194
CI01000013_02033469_02034368.mRNA mRNA upstream 45928 2033115 ~ 2034738 (+) True CI01000013_02033469_02034368
CI01000013_01989323_01993472.mRNA mRNA upstream 86591 1988531 ~ 1994075 (+) True CI01000013_01989323_01993472
CI01000013_01950237_01964249.mRNA mRNA upstream 116376 1950015 ~ 1964290 (+) True CI01000013_01950237_01964249
CI01000013_01762491_01764612.mRNA mRNA upstream 315861 1761758 ~ 1764805 (+) True CI01000013_01762491_01764612
CI01000013_01629280_01635701.mRNA mRNA upstream 444894 1629228 ~ 1635772 (+) False CI01000013_01629280_01635701
CI01000013_02386700_02394730.mRNA mRNA downstream 258079 2386348 ~ 2395296 (+) True CI01000013_02386700_02394730
CI01000013_02409027_02409452.mRNA mRNA downstream 279037 2407306 ~ 2409607 (+) True CI01000013_02409027_02409452
CI01000013_02411870_02429950.mRNA mRNA downstream 282158 2410427 ~ 2429957 (+) True CI01000013_02411870_02429950
CI01000013_02510121_02510417.mRNA mRNA downstream 381814 2510083 ~ 2510534 (+) False CI01000013_02510121_02510417
CI01000013_02528016_02529126.mRNA mRNA downstream 399179 2527448 ~ 2529246 (+) True CI01000013_02528016_02529126
TU88574 other upstream 1127697 946521 ~ 952969 (+) True G77695
TU88411 other upstream 1371117 708833 ~ 709549 (+) True G77533
TU90328 other downstream 338496 2466765 ~ 2467171 (+) True G79309
TU91155 other downstream 1455739 3584008 ~ 3584784 (+) True G80062
TU91262 other downstream 1936664 4064933 ~ 4065829 (+) True CI01000013_04051081_04064651
TU92027 other downstream 2706809 4835078 ~ 4836232 (+) True G80845
TU92951 other downstream 3928029 6056662 ~ 6056782 (+) True G81681

Expression Profile