RNA id: TU90208



Basic Information


Item Value
RNA id TU90208
length 378
lncRNA type sense_over
GC content 0.38
exon number 1
gene id G79193
representative True

Chromosome Information


Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 2513478 ~ 2513855 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TCTTGCTCTAGTAATAGTAGTGCAGGAAAAATGGCACAATATAGTTTACAGAGAGCCAAAGGCTACTAGACTAAACTCTAGTGTTGAGCGTTGCTCATATGAACCATTTGCATCAAATAAAAAAAAAGCTTAATAAAGTTTCCGTCAATGAAGCATGGTTAATGATCCACCAAGATAAAATGGAATTCCCTTTACTTCCCATTTGCCTTCTGAGGGACCGTGCATCACATTTTATCTTGTCATATGGTCAATAAAGTACTTATTCAGTATACTTTTGGGCTATTTTGGGCTGATGGAATACCTGACTCGGTCTAAACTAAAGTTGCTGCACAGGGAACGCTGCTATTGGAGCTTCTGAGGAGCTCTGGCTGGGACAGGGTTAAAGTCTCCTCCCTGGGGCTGTGCTTGCTACCGCTAAAATTAAACCTCCCCCACAGCTGGTTCCCATTAGCCTGCAGTGACACTAGGAGCCTGTACTTAAGCTGTGCTGCGGGGGCTTCGCCGCCCCACTCAGATAATACTGTCCCCTGCCACAGGCCAAGTTTAAACTGGCCCTGCACAGCTTCTGCTGGCAACGACTGTGTTTTCAAACCAGGAGAAAAGAAGAGGAGAGAAAGGTGAGAGTTATAGAGAGAGAACATTATGGAGAAGAGCCACGCTTCTGGTGGGGGGCGTCGAGTCTGTCATCACATTTGAGTTCATCAGAGGAGAAAAACATTTACATGCTAATAAAATGAAGGCCATAAGAAGCAAAACAATATGAAAAAATTAAGATGTGCGATATATATCTGTATCATATCCGTTAGCAATATTAGAGATTTTGTTCAGATTTAGATGACTTTTTTCATCATCTAATGCTCACTTAAAGTTTACTCACTTTAAAAGCATTATTATATTAAATAGAAGCTAAAGTTCGTAAACAAACTTTGATGTTGGCTTGAGAAAGCCCAAAGCTGGAAGTGGGACTTGAACTTTGGTCGCCTTGTGTACAGCTGCGACAAATGTATCTGTGAATCTCAAAATTAATATCCATTTTTATATTATGTTATGATGATGACCAAATTCACTTGTAGCATTTAAGACAATTAATTTTAGTGTTTTATTTTTAATTACTATCAGACATATATTGGTCATAACATGAAAATAATTATCAGCTTTTAGATATCAGCCAGAATTTTAATGTCAGTTGGCGCATGCCTAGAAATAAAATGTATGTGGTCCTCTAAAATAATACCTGTCAGTTAATAATGCTGAGTGAATAACTAAATCCCAACTACAAAATGCCTCGTGGCACATTTAAAAGTTAATATAATGATTTTTTTTTTTTTTTTTTTTAATCAGGCATATCATCAAAGCGGCTGCTTGTGAAGCCATATATTTAAGGTGCTCGTCTCGCTGTTTTTCACATATTCTTTACAACTCTGCTTTTATCTCTAAATTGCTTTTACAGTTTGGAAATCTGGCAGCAAAACACATGCATGGCATTGTGAGTAACAAATGAGACGTTGATGACTGATTTACGGCGTGAGAAATAAACCAATCGGCAGTCATGTAAGGACACCTCAGCCAATAGGCAGACAGTGATCGCACATTCCTGATGACAGGCAGCACATATCTCACATGGTTTTGCATGTTAGGATCAACTGCGAGTCTGGGTGCTTTCCGGTTAGGGTAATATTTTAGCTGTAGTCTATTAAAACCATAGCTCTTAAGAGGGGTCTGTTTGTAGAAAAGGTTAACAATCAGTTTAATTAGGAGCAGAGGCTGGGGCGCACGCATGAACTCTCCCGGCCTGACACTCACCGCTCTACAGGGAATTCACCATGTCAGACGTTCACCGTGTGAGTGTGTAGATGAGAAAAAGAGAGAGAAAATTAAAGGATGAAAGGAAAACAGAGGGCATGTAAGTGAGGAGGAGGAACAAAGTGAGAAAGGAAGGGAGGATAGACCTTATCAGCAAAGTTTGTCCATTCAGGATTTCCTTCCAAAACAAAGAGAAAGGAAACTCCAACTCTCAAATGTGTTACATGGATATAAATCTGTCAAGAGCACTTGTTAAGGTCATTGTTTTTTTCAACAACTTCTAAAGGTGATTTAAAACAATGACTATAGGATGCACAAGACATGTCCAGATAAGGGGATAAATTACACAGTTGTTGCAACAACAATAGATGAAAATGTGTTACGTTAAAGACAATTTCAACCTGATTGGTCCCTTAAAATGGCTTTCACTAATGCAACCAAATGAAGGTATGTAGATTGATTCACTCACTTTTTACAGTGTAACATTATAACATTATTTAAATATGGTATTACTGTGGTTTTTTTGGACATGCACAAGGGTAATACCATGTTTTTGGACATGCCCCTTAAATTTAGACAGATTTCCTTTAAATAAAACTAGAGATGGAATTGTGTGCTTATACTAAACTATAAAATTCATGTACAATAGCATTTGTACTCCAGGGTACTTTGTAAGAATACCATGGTACATGGCCAAAAGCCATAGTAGTAACATAGTGGTAATACTAAGTGGTAATACGTACTGAAAAAATATTACTGTAACCTAAAAACAAAAAAAAGTGCTTCATGTGGTAAAGTCTAAATTGATTTAAGCAGAAAATATATCCAAAATATTATTTAACATCACTGAATCTACATTAATTTATTAGGTTACACAAACAAAGCTACATTTAAGAGTTAAAGGGATAGTTCAACCTAAAATGGAAATTCTGTCATTAATTACTCACCCTCATGTCGTTCCAAACCTGTAAGACCTTTGTTCATCTTCGAAACACAAATTAAGATTTTTTTGATGAAATCCGAGAGGGTTTTTTTTTATCCCCCATAGACAGCAATTTATCCACCACTTTCAAGGTCAAATTGCTGTCTAATGATGTTTTATTAACAAAATTCGGGAGGAGCAAGTTCAGATAATTAACCTAATTAGCACAGGTGGAGAGCATTCAGTTAATCAACTCAACCAATGTCAAGAGGTATAAATTCAGCAGACTTACCTCTGTTCATCTGAGAGTTTATCAGCATCCCTCCTCCACCCCATCTCCTCACTTCTAGTTCTATCTACTTTTACCACACCGGGGGGAGTACTCTGGGTTCGGGCCAAAATTCTGAGCTCAGAGCCCTCTCCCCGGACAGCACGCCAAATACACATAACTTTACTCTATTTAATTATATGGATATGTGAATTCGTGAATGGGGGATAAAAAAAAAAAAAAACTCTCAGATTTCATCAAAAAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU90329 lncRNA upstream 41172 2468883 ~ 2469113 (+) True G79310
TU90322 lncRNA upstream 52684 2457388 ~ 2457601 (+) True G79303
TU90309 lncRNA upstream 72431 2437648 ~ 2437854 (+) True G79291
TU90308 lncRNA upstream 73442 2436442 ~ 2436843 (+) True G79290
TU90209 lncRNA upstream 90178 2419521 ~ 2420107 (+) True G79194
TU90351 lncRNA downstream 12251 2526106 ~ 2526930 (+) True G79332
TU90363 lncRNA downstream 58846 2572701 ~ 2573523 (+) True G79344
TU90379 lncRNA downstream 82083 2595938 ~ 2598371 (+) True G79358
TU90445 lncRNA downstream 180857 2694712 ~ 2695125 (+) True G79402
TU90440 lncRNA downstream 220249 2734104 ~ 2748629 (+) True G79397
CI01000013_02411870_02429950.mRNA mRNA upstream 80328 2410427 ~ 2429957 (+) True CI01000013_02411870_02429950
CI01000013_02409027_02409452.mRNA mRNA upstream 100678 2407306 ~ 2409607 (+) True CI01000013_02409027_02409452
CI01000013_02386700_02394730.mRNA mRNA upstream 114989 2386348 ~ 2395296 (+) True CI01000013_02386700_02394730
CI01000013_02081079_02127936.mRNA mRNA upstream 382016 2080666 ~ 2128269 (+) True CI01000013_02081079_02127936
CI01000013_02033469_02034368.mRNA mRNA upstream 475547 2033115 ~ 2034738 (+) True CI01000013_02033469_02034368
CI01000013_02528016_02529126.mRNA mRNA downstream 13593 2527448 ~ 2529246 (+) True CI01000013_02528016_02529126
CI01000013_02656037_02664145.mRNA mRNA downstream 142182 2656037 ~ 2664398 (+) True CI01000013_02656037_02664145
CI01000013_02666598_02669821.mRNA mRNA downstream 152743 2666598 ~ 2669821 (+) True CI01000013_02666598_02669821
CI01000013_02685665_02686639.mRNA mRNA downstream 168612 2682467 ~ 2686835 (+) True CI01000013_02685665_02686639
CI01000013_02692887_02696848.mRNA mRNA downstream 178588 2692443 ~ 2697020 (+) True CI01000013_02692887_02696848
TU90328 other upstream 43114 2466765 ~ 2467171 (+) True G79309
TU88574 other upstream 1557316 946521 ~ 952969 (+) True G77695
TU88411 other upstream 1800736 708833 ~ 709549 (+) True G77533
TU91155 other downstream 1070153 3584008 ~ 3584784 (+) True G80062
TU91262 other downstream 1551078 4064933 ~ 4065829 (+) True CI01000013_04051081_04064651
TU92027 other downstream 2321223 4835078 ~ 4836232 (+) True G80845
TU92951 other downstream 3542443 6056662 ~ 6056782 (+) True G81681
TU92936 other downstream 3564707 6079666 ~ 6082367 (+) True G81666

Expression Profile