RNA id: CI01000013_02815238_02816664.mRNA



Basic Information


Item Value
RNA id CI01000013_02815238_02816664.mRNA
length 945
RNA type mRNA
GC content 0.40
exon number 2
gene id CI01000013_02815238_02816664
representative False

Chromosome Information


Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 2815180 ~ 2817323 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTATTAAAGGAAGTATGTATGCATCTATACATGCTTGCAGAATTTAATATGCATAGAGATGTGTCTGGACACATGTTGGGAAAGGGTAAACGGAATCACACCGGTTGCGTGGAAAACGAGCCACAAGACAAGCAAACCATACTCTCGTCTTCTTGGTAGAACAGCTGCTGTGATCAAGCTCGATCACCCCGGGCAAAAACAGCAATCTGGCTTCTGTTTGTTGAAAATGGCATGGGACATCAGTACTCATGCGATGCTGAATCTGAACAAACGCAATTCTTTCTAACTGCCATTGAGCGTTAACTTAAACAAAGAGTTAAACTGAGTAAGAGACTGTTTCGTCACTTTGATGCAAAGACCAGGAGTGATTTTATTATTTATTCATAACATCAAGATGCCAGTTCTCCTAAAAACAGCAGTGGGAAAATAGGTAAGCTGCCAAGACATGCAAATTAACCTCATTCCTCCCACAGGGATCGGCAATGATGTTTTGCAGGGCTGCGCATCCTCCATAGCTCTTTATTTGTAATCCACTGACTTCTTCCACTTAACTTCAGCCGTGAGGGCAAACATTAAATCTTGTTGCAATATGTCGAAATGAGATGCCAAAAGCAGCAGGGAGGCGGAACACAGTTCTCACAGGTTGAGACTCGATGGAGAGCTTTTGGAAGAAACAGGTCCAGGGTGCAAAAACAGATCTTGCCTCAGAGTCAACCATGTTTAATTGTGAATATGCACAGTATTATTATTAATATCTATTCATCAATTCTTGTACCACAGGTTAACGCAAGTAACACAAAGCATATTTCACAAATTAATCCCATTTGTGACAGGAACAGTTGAATATGGAACAGTCAAATCCATTAAATCCATTGCTCCAGGAGGCCATTTTACACTATCATAGCAAACTTGGACAAATCTTAAAAAAAAAAAAGTCAAATTTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU90523 lncRNA upstream 1672 2813171 ~ 2813508 (+) True G79479
TU90522 lncRNA upstream 2291 2812687 ~ 2812889 (+) True G79478
TU90512 lncRNA upstream 15718 2797984 ~ 2799462 (+) True G79468
TU90511 lncRNA upstream 18604 2796329 ~ 2796576 (+) True G79467
TU90510 lncRNA upstream 19377 2795091 ~ 2795803 (+) True G79466
TU90528 lncRNA downstream 102 2817425 ~ 2817690 (+) True G79484
TU90529 lncRNA downstream 758 2818081 ~ 2818490 (+) True G79485
TU90569 lncRNA downstream 7769 2825092 ~ 2825318 (+) True G79523
TU90563 lncRNA downstream 56691 2874014 ~ 2875003 (+) True G79517
TU90588 lncRNA downstream 59640 2876963 ~ 2877788 (+) True G79540
CI01000013_02709871_02711692.mRNA mRNA upstream 102681 2709453 ~ 2712499 (+) True CI01000013_02709871_02711692
CI01000013_02692887_02696848.mRNA mRNA upstream 118160 2692443 ~ 2697020 (+) True CI01000013_02692887_02696848
CI01000013_02685665_02686639.mRNA mRNA upstream 128345 2682467 ~ 2686835 (+) True CI01000013_02685665_02686639
CI01000013_02666598_02669821.mRNA mRNA upstream 145359 2666598 ~ 2669821 (+) True CI01000013_02666598_02669821
CI01000013_02656037_02664145.mRNA mRNA upstream 150782 2656037 ~ 2664398 (+) True CI01000013_02656037_02664145
CI01000013_02859975_02863496.mRNA mRNA downstream 42652 2859975 ~ 2863946 (+) True CI01000013_02859975_02863496
CI01000013_03019688_03044233.mRNA mRNA downstream 202365 3019688 ~ 3044374 (+) True CI01000013_03019688_03044233
CI01000013_03087239_03094115.mRNA mRNA downstream 269916 3087239 ~ 3094458 (+) True CI01000013_03087239_03094115
CI01000013_03121085_03147061.mRNA mRNA downstream 303762 3121085 ~ 3147622 (+) True CI01000013_03121085_03147061
CI01000013_03186643_03190449.mRNA mRNA downstream 369320 3186643 ~ 3190677 (+) True CI01000013_03186643_03190449
TU90328 other upstream 348009 2466765 ~ 2467171 (+) True G79309
TU88574 other upstream 1862211 946521 ~ 952969 (+) True G77695
TU88411 other upstream 2105631 708833 ~ 709549 (+) True G77533
TU91155 other downstream 766685 3584008 ~ 3584784 (+) True G80062
TU91262 other downstream 1247610 4064933 ~ 4065829 (+) True CI01000013_04051081_04064651
TU92027 other downstream 2017755 4835078 ~ 4836232 (+) True G80845
TU92951 other downstream 3238975 6056662 ~ 6056782 (+) True G81681
TU92936 other downstream 3261239 6079666 ~ 6082367 (+) True G81666

Expression Profile