RNA id: CI01000013_03477151_03488842.mRNA



Basic Information


Item Value
RNA id CI01000013_03477151_03488842.mRNA
length 1418
RNA type mRNA
GC content 0.46
exon number 11
gene id CI01000013_03477151_03488842
representative True

Chromosome Information


Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 3477040 ~ 3489333 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATTTAAAACCCCCTGCAAAGCGCTGGGGGAGTTACAGTGCGAATTGGACTCTGACTGAGTAAAAGTTCGACCGGGATTTTCTTGTGGACAGTAGGACAGATATACGAAAACATGGCAAACAAAGGACAGCAGCCTCCCTACCTTCACTTGGCAGAGCTGACCGCATCCCAGTTTCTGGAGATCTGGAAACATTTTGATGCAGACGGAAATGGCTACATTGAGGGTAAGGAGCTTGAAAACTTCTTTAGTCAGCTGGAGATTGCACGGAGAGGGGCTGGTGTGGACCCCTCAAATGCAGCCTTTAAAGAGAAGATGACAGAGTTCATGCAGAAATTCGACAAGAACAAAGACGGGAGAATTGAGATGTCAGAGCTGGCTCAGATCTTGCCCACAGAAGAGAACTTCCTTCTCTGCTTTAGACAGTTTGTGGGATCCAGCACTGAATTCATGGCAGCCTGGCGGAAATATGACACAGACCGCAGCGGCTATATTGAGGCTAATGAACTTAAGGGCTTCCTCTCTGATCTGCTTAAAAAAGCAAACAGACACTATGATGACCAGAAATTGCAGGAATACACACAAACAATACTCAAGATGTTTGATCTGAATGGCGATGGGAAACTGGGTCTGTCTGAAATGGCGAGGCTTCTGCCGGTTCAGGAGAATTTCTTGTTGAAGTTTCAGGGCGTCAGGCTGACTGCTGAGCAGTTCAATGCCATCTTTACATACTATGATAAGGATGGAAATGGATATATTGACGAGCAGGAGCTGGATGCTCTCCTGAAGGACCTCTATGAGAAGAACAATAAGGAGGTGGACACTAAGAGCCTGACTGGTTATAAGCAAAGCATCATGGCACTGTCAGACGGGGGAAAACTGTACCGCACAGAGCTGGAGATTGTCCTTTGCCGGGAGCCCATGCTGTGAATCGAGGCTTCCTGACCTCCATCTCAGCTCTGTTCCAGCTGCCTGAATACTGTAACCGTGTGCATGTGCCGGGCACCCCCATCCCCTTCCCATCCCCCTTCCTAAATGAGTTCTGAATGAGTGTGCACAGAAAAGCACAAAGTCTGTCCTCTCCCCTTCTTTCCTTTCCCTTCCCACAACCCAATCGCCACTGCTTTCCTTTGCCTACAAACTGAAGCTACTATGATGCCCTCTGCTCAATTTTTAAACTATATATTTAAAGAAGAACCTTTCTGAAGGAGTAGCAGACTAATGGTATAATATGATTAGATATGTGACATTTATTTGGAGTGCTTGGCTTTAAATTCTTCTGGTTTCTTCCCTTCCGTTTGGTTTCGTCTTCAGTTTGTTTTTGTCCTCATTTCATCTTATTCCTGCCCAATTATGTTTGGGTTTGTGGTGTTTGTTTGTTTTTTGGCTGATACTGTTTAAGGATGTAACTGAGAGCATTA

Function


GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU91090 lncRNA upstream 65035 3411495 ~ 3412005 (+) True G80003
TU91080 lncRNA upstream 86714 3389945 ~ 3390326 (+) True G79994
TU91059 lncRNA upstream 102797 3373928 ~ 3374243 (+) True G79976
TU90988 lncRNA upstream 111147 3365542 ~ 3365893 (+) True G79909
TU90688 lncRNA upstream 274727 3201911 ~ 3202313 (+) True G79639
TU91151 lncRNA downstream 41102 3530435 ~ 3530847 (+) True G80058
TU91133 lncRNA downstream 113030 3602363 ~ 3652575 (+) True G80041
TU91132 lncRNA downstream 217390 3706723 ~ 3708228 (+) True G80040
TU91129 lncRNA downstream 219624 3708957 ~ 3712091 (+) True G80037
TU91161 lncRNA downstream 223643 3712976 ~ 3713187 (+) True G80068
CI01000013_03457529_03463949.mRNA mRNA upstream 12029 3457529 ~ 3465011 (+) True CI01000013_03457529_03463949
CI01000013_03262979_03269729.mRNA mRNA upstream 207158 3262979 ~ 3269882 (+) True CI01000013_03262979_03269729
CI01000013_03241607_03258684.mRNA mRNA upstream 217837 3241607 ~ 3259203 (+) True CI01000013_03241607_03258684
CI01000013_03225714_03236717.mRNA mRNA upstream 239995 3225714 ~ 3237045 (+) True CI01000013_03225714_03236717
CI01000013_03186643_03190449.mRNA mRNA upstream 286363 3186643 ~ 3190677 (+) True CI01000013_03186643_03190449
CI01000013_03493064_03499971.mRNA mRNA downstream 3731 3493064 ~ 3500131 (+) True CI01000013_03493064_03499971
CI01000013_03501267_03503856.mRNA mRNA downstream 11934 3501267 ~ 3504388 (+) True CI01000013_03501267_03503856
CI01000013_03505522_03510594.mRNA mRNA downstream 16189 3505522 ~ 3510717 (+) True CI01000013_03505522_03510594
CI01000013_03565240_03566364.mRNA mRNA downstream 75803 3565136 ~ 3566551 (+) True CI01000013_03565240_03566364
CI01000013_03570185_03581155.mRNA mRNA downstream 80756 3570089 ~ 3581729 (+) True CI01000013_03570185_03581155
TU90328 other upstream 1009869 2466765 ~ 2467171 (+) True G79309
TU88574 other upstream 2524071 946521 ~ 952969 (+) True G77695
TU88411 other upstream 2767491 708833 ~ 709549 (+) True G77533
TU91155 other downstream 94675 3584008 ~ 3584784 (+) True G80062
TU91262 other downstream 575600 4064933 ~ 4065829 (+) True CI01000013_04051081_04064651
TU92027 other downstream 1345745 4835078 ~ 4836232 (+) True G80845
TU92951 other downstream 2566965 6056662 ~ 6056782 (+) True G81681
TU92936 other downstream 2589229 6079666 ~ 6082367 (+) True G81666

Expression Profile