RNA id: CI01000013_03565240_03566364.mRNA



Basic Information


Item Value
RNA id CI01000013_03565240_03566364.mRNA
length 1416
RNA type mRNA
GC content 0.47
exon number 1
gene id CI01000013_03565240_03566364
representative True

Chromosome Information


Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 3565136 ~ 3566551 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATATATATATGACATTTTGTTTTCTGTAAGGTGCAGTCAAACATCTCTCAGTGAGAGAGCAAGACAAAGGATGATCTTGAAGATTTAACCAAGCACTGAGCATCATGCCTCAACGGAAGAGAGCCCTTGTTCCCATTAATACAAGGAGAAGGGTTAAAGGTGATGAAGATTACTTCCCTTTCAACTCCCTACCGGTGGAATGTCAGCTCCATGTGCTCTCGTTCCTGAGTGAGGTGGATAAATGCAACGCTGCTCTTGTGTGTGCAAGCTGGAGTTGCTTAGTGCGCTCCGGAAAGCTCTGGAGAGTCGCAGACTATTCTCGCCGTGGAGTGTTTCATCTGGGCCAGGAGGGTCTGCTCGTTTCCAACAGGGAGTTTGAGCGCTGGAAAGCTTGGGTTAACCATTACACCCATCATCTTATATCCCGTGGGGCTAGTTTGCTCACTCTGAAGGCCAGTTTTGATCTAGGGGACCCGTGCAATAAATGGGGAGAGCTCCTATCACACCTTCTAGAGAACGTGCATTGCCGTGATCTCAGTCATTTAGATCTGAACTGGACATTTACGCTGCTGGAGCCCCTCGACCTTCGTGTTCACACCAGTTCTAGTTCTCACCAAGACAATATTACCAAGATGGACCAGGTTAATAACTTCCAGATTCTCCTGACCAGACTCGTCCACAGCTGTCCCAGGATAACCAAAATGCGGCTGCACTTCGACTGGTCTGAAACATCAGTTACGCTGATCACTCAGTTTCAACACCTTCGTATCTTAGAACTGAAGTATTTTTGGGTATTCAAAGGGGTCAGCCCAAACACTTTACAGACACTGACGAAATCACTCCCTAATCTAAAGTCCCTTACGCTCCATGTTCTTGTACCACTGCGAAATTTAGGCATCTCGTACACCCTCGAATCGCTTTCGCTCGAGTTCTTGGATGTGTCGCCCAGTCGCGGTCTGGTCTTCTCCTGCCTCAACCTTCCAGCGCTGCGAGAGCTGCGGGCGAAGAAGATCGTTCGGGGCATTACTCTGGACCGCCGGACTCGACTACGCATACAGAGCCGATGGCCTTGCTTGTATCAGGTCTTACGTGAAGGGACGCCCAAACTTCAGGCCCTTAACAATGAAAGACTCCTTCCCAACTGGAAAGAGCAAAGTTACAGAGAGCTGACGTCAATCCTCCAGCAGTCTTGCTATTGCCTTCAGCATTTAGACAGCTGGCTCTGGTGAAGTCGAGACTTAAACAATCACAGGCCGCACATTAATGGCCTGAAGGGACACGACCACATCCTGAAGAAAAACATTAGAAGGACCAAAAATATAATCAGATAACACAATTCTGATCCTCTCTAATGAAAATTATTTAACGCTGTAAATTAATTATACATCAGCCACCCCTTGCTAGGAAATAATTGGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU91151 lncRNA upstream 34289 3530435 ~ 3530847 (+) True G80058
TU91090 lncRNA upstream 153131 3411495 ~ 3412005 (+) True G80003
TU91080 lncRNA upstream 174810 3389945 ~ 3390326 (+) True G79994
TU91059 lncRNA upstream 190893 3373928 ~ 3374243 (+) True G79976
TU90988 lncRNA upstream 199243 3365542 ~ 3365893 (+) True G79909
TU91133 lncRNA downstream 35812 3602363 ~ 3652575 (+) True G80041
TU91132 lncRNA downstream 140172 3706723 ~ 3708228 (+) True G80040
TU91129 lncRNA downstream 142406 3708957 ~ 3712091 (+) True G80037
TU91161 lncRNA downstream 146425 3712976 ~ 3713187 (+) True G80068
TU91162 lncRNA downstream 146746 3713297 ~ 3713517 (+) True G80069
CI01000013_03505522_03510594.mRNA mRNA upstream 54419 3505522 ~ 3510717 (+) True CI01000013_03505522_03510594
CI01000013_03501267_03503856.mRNA mRNA upstream 60748 3501267 ~ 3504388 (+) True CI01000013_03501267_03503856
CI01000013_03493064_03499971.mRNA mRNA upstream 65005 3493064 ~ 3500131 (+) True CI01000013_03493064_03499971
CI01000013_03477151_03488842.mRNA mRNA upstream 75803 3477040 ~ 3489333 (+) True CI01000013_03477151_03488842
CI01000013_03457529_03463949.mRNA mRNA upstream 100125 3457529 ~ 3465011 (+) True CI01000013_03457529_03463949
CI01000013_03570185_03581155.mRNA mRNA downstream 3538 3570089 ~ 3581729 (+) True CI01000013_03570185_03581155
CI01000013_03617490_03705093.mRNA mRNA downstream 50939 3617490 ~ 3705093 (+) True CI01000013_03617490_03705093
CI01000013_03715150_03721616.mRNA mRNA downstream 148599 3715150 ~ 3721731 (+) True CI01000013_03715150_03721616
CI01000013_03744519_03787129.mRNA mRNA downstream 177968 3744519 ~ 3788177 (+) True CI01000013_03744519_03787129
CI01000013_03823326_03839656.mRNA mRNA downstream 256775 3823326 ~ 3839910 (+) True CI01000013_03823326_03839656
TU90328 other upstream 1097965 2466765 ~ 2467171 (+) True G79309
TU88574 other upstream 2612167 946521 ~ 952969 (+) True G77695
TU88411 other upstream 2855587 708833 ~ 709549 (+) True G77533
TU91155 other downstream 17457 3584008 ~ 3584784 (+) True G80062
TU91262 other downstream 498382 4064933 ~ 4065829 (+) True CI01000013_04051081_04064651
TU92027 other downstream 1268527 4835078 ~ 4836232 (+) True G80845
TU92951 other downstream 2489747 6056662 ~ 6056782 (+) True G81681
TU92936 other downstream 2512011 6079666 ~ 6082367 (+) True G81666

Expression Profile