RNA id: CI01000013_04084679_04088148.mRNA



Basic Information


Item Value
RNA id CI01000013_04084679_04088148.mRNA
length 3326
RNA type mRNA
GC content 0.40
exon number 5
gene id CI01000013_04084679_04088148
representative False

Chromosome Information


Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 4083814 ~ 4090171 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATTTAAATCGCACCATATTCATTTAAAGTCAAACAAGTTATTCGGAAATTGGGCCCAAATGTCTGTAGTAGGGGTGTAATGGTACCCTCATGTCTGAACTCACGATCCGATATTATTGCGATACTCCAAAACATATGGTAATAGGATAACAAAAAATGTACTGTTGATTAAAATGTTAAATTTGGTATTACATTGGGGGTTGGAATGAATAGGCTTGGACTTGGTGCTGGTAACCCGATGCACAGGACAATGGTGACACCAGAATAAAAATATTCATGATTCTAACGCTGAAACACAGATTTATTTTAGTTGAATATGAATATTTAAAATAATGTAGGCCACTTTTTACTGGTAACATAAGACATTTGGCATTAGCAGGACCCACAAGTATTCCCCCATTGCATTATTATAAATTATATTCAACATTATATATAGTAGTTTAATGTAGTACTGACACTAAAACTCTGTAAACTTGAATTTTTTCCCCTCACACAGTAATTTTAATTTTCGGTGAACTATACACAACGCATTTTGTCACCATTCACGATACGATATTGTTGCATTTTTGTATTGCGATATATTGTGACACGATATATTGTGACACTCCTAGTCTGTAGGAATATTGACACCTTAACATTTGCATTCTGATGAGCCTTTACAACAGAACAGAAACTGTTCATCACAATAACGTGTCTAATGAACAAAGGTGGATTACGTCCAGAGCTGTCAGGAGCCAAGGCCTATTTTGCCTTCTCCAGACCCCACCTTTTTCATTTTCTCAGCAACCCACCCCCAAGTCCCTCCTTCATCTAGCCCACCGCAGGGACCCGACCTTCATTCTCTCTCCACCCGCCTGACCGTTGCCATGGCAACTGTAGCCGAGCAGGCCCCATCTCCTATCGCGCGCCGATCATTATGCAAATGGTACCTCAGCTTGACCGTAACAGCCTGTAAAATCATATTACGTGCACACAGGCAGGTCATTAAATTGAATTTTCGGCCTGTCGATCGGCTGAGTACCGCACACGAATGGTGGATAAAAAGGCGAGCAATAGCGGAGGATGATGTGGGGTCGTTCAGGAACACAGCACGGCCGACATCACAGCCTCTTCCACTGATGAAAGGAGCTCACATCACAGGTCTGGCACTGGCTTTGACTGAGACCAAAGGAGAAGGGGGAGGAAAGCCTCTGAAAAATAACTCGGCTACAGATACATCATCTATAGAATTTATGAGGCTCAGTTCAACCCAGGGCCAGAACGGAGCACAAACACATCACAGGGATTTCGGCTCTATTTTTCATTTCAATGGCAAACACGCAGCACTGCGCCGACCAGGAAATTATTTAGAACATATTGCCGAAAATGCCAAGCGGTTGCAGAAGCCAGACACAATTTTTTTTTTTACAAGATACTCTGTAACACCCAAGTACTCGGACCTGTCTAGCACCATTTCAAGAGCACTCCAGGGCCAGGCTGTCAATGGCGTGCTGAAAGCTATTTGTCTGTTGCCATCAGCGCCAGCGGAATGGAGTGAGACGCTGATGAGCATTGAATATAGAGGAAAACAACTGGCCCTTCCAGGCATGTATCAGATGCTAGCGTGCATCCTGAAATCCGCATTACTCCACGACTGTTTAAAATACAAAGTGCCTAGAGACCACCAAATGGATGAGGAAACAGATTGCCTAGCGGTCAGAATTAAATCCTCAGTGCTGAGAATAATGCGCTGCCAGTTGGGAGATAAGTGGTTAACAGGAGGCATCGCAGGGGCAAAAGGCCTGACAGAGAGAGGAGTGCAGAGACTCACACTGTGGACACTGATGGATCGGCATCCACCAGCTCCTCCCTGATGCCATTAACCTTCATAAGGTGGAGAAGGGGAGCAGGCTGAGAAAGCTGGGTTGTCTCTTAGGTGGCCTAACTACATCTGGTGCACAGCACAATCTCATTATTATCTAGGGGACAGGACATGTACGATGCGTCACAATAATGTCAGGACTAGGGCTGCACAATATATTGTTTCAGCATCAATATCATGATGTGCGCATCCACGATAGTCACATCGCAGGATGTTCGATGTCTAGTATAGGGATCATTAATCCATACGGTTCAAAACGCATCTGATTCTTGGATTAATTGCAAAGTTTGACCATCATACAATGAAAGTTTATCATTTGCATGTTTTAGGTCCTGTCAGCTTAAACATTCAAGCGCAAAGACGTGAAAGAGCACTCAATTCTAAATGTGCAGCTTTTTTCTGTGCGCGCACGGAGCCGCGCAGACGCATGTGAACACCGAATGCCCTTCTCTTCCGCTTCTATTTGTGCCTGAACGGACACATACATGCAAAAAAAATTGTCAAAATGAGCATAAAACATCGAGTATCCTCGTAAAACACAGTTGCTTATGGCTTAGGTGAACTAAATTAAGAAAGAAAACTGGATGTGTAACAGTATTTTGGATCGCGCATTCGGTCTTAAAGTGACAGCAGCCTAATATTCCTGCTGATTTCTGTGTCATGAATGTTAATAAAACAACAAAAGACAAAGAGAAAATAACTTTTGTAGTTTTAACACAGATGAATTATATTTAATTTATACAGTGAAGACTATGCAGTGTTATTTTACATTTGATTGTTCAATTTCTGTACCTGAATACTGTTAGGCTTACCTGAAAAATATAAAGCAGTATTTATTTTGTATCTTTGTTCTATTATATTTATCTACGCTTGTAATTTGTTCATTATTTTCTTTGTTTATTCATTTTCTTTGTTTATTCACTCACATACATAATCACCCCAATGATTTTAGAATGATTCTTTCCAAATAGAGCTATTCAAGTCATCTGGTGAAGTTTTTTTTATTTTTTTCCCATATCGCAATATATAAAATCGCAGACAAAACAATTTACCGCAATGTCATTTTTTTCCAGTATCATGCAGCGCTAGTCAGGACATCAGATTAGTCTTTGTAATTACAGTGGAAGAGTAACCTAAATTTAAAAAGACAATTTTGAAGTAGTAAGGTGGACGGAAATTAAGAAAGAAACAACTAATCTATAAAATCAATAGTTGATAACAATATGAAAACAGTCACTTAGTTCTTATGCTGTGCACAGATAACATTTGTTATTGATGTCACTTCGCAGTAGACAAAAAAAAAAAAAAAAAAAAGGAAAAAAAAGAAAAATGGCAGAGGAGAGAAAAAAAGGTCACAACAATTTGCCCAATGCTTCAAAGAAGGTCATAATAGGTCATATAGTTTCATGTTGCTGGCTTCAGGCGCTTATTGGAAAAGACATGGAATATACGATTAAATCAAAGAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU91281 lncRNA upstream 5438 4072562 ~ 4078376 (+) True G80175
TU91280 lncRNA upstream 21456 4062088 ~ 4062358 (+) True G80174
TU91279 lncRNA upstream 21783 4061647 ~ 4062031 (+) False CI01000013_04051081_04064651
TU91274 lncRNA upstream 27755 4055833 ~ 4056059 (+) True G80168
TU91257 lncRNA upstream 73262 4010315 ~ 4010552 (+) True G80153
TU91630 lncRNA downstream 26537 4116159 ~ 4116382 (+) True G80493
TU91642 lncRNA downstream 37292 4126914 ~ 4127129 (+) True G80505
TU91656 lncRNA downstream 94050 4183672 ~ 4183892 (+) True G80518
TU91643 lncRNA downstream 116515 4206137 ~ 4206711 (+) False G80506
TU91644 lncRNA downstream 116515 4206137 ~ 4206711 (+) True G80506
CI01000013_04051081_04064651.mRNA mRNA upstream 18645 4050837 ~ 4065169 (+) False CI01000013_04051081_04064651
CI01000013_03952621_03964132.mRNA mRNA upstream 119580 3952621 ~ 3964234 (+) False CI01000013_03952621_03964132
CI01000013_03949848_03950925.mRNA mRNA upstream 132521 3949848 ~ 3951293 (+) True CI01000013_03949848_03950925
CI01000013_03937929_03938255.mRNA mRNA upstream 145553 3937929 ~ 3938261 (+) True CI01000013_03937929_03938255
CI01000013_03902606_03908849.mRNA mRNA upstream 174756 3902606 ~ 3909058 (+) True CI01000013_03902606_03908849
CI01000013_04316134_04317091.mRNA mRNA downstream 226512 4316134 ~ 4317198 (+) True CI01000013_04316134_04317091
CI01000013_04344339_04347938.mRNA mRNA downstream 254717 4344339 ~ 4348083 (+) True CI01000013_04344339_04347938
CI01000013_04425884_04426805.mRNA mRNA downstream 336126 4425748 ~ 4427010 (+) True CI01000013_04425884_04426805
CI01000013_04505188_04527744.mRNA mRNA downstream 415523 4505145 ~ 4527872 (+) True CI01000013_04505188_04527744
CI01000013_04542059_04550082.mRNA mRNA downstream 452437 4542059 ~ 4550307 (+) True CI01000013_04542059_04550082
TU91262 other upstream 17985 4064933 ~ 4065829 (+) True CI01000013_04051081_04064651
TU91155 other upstream 499030 3584008 ~ 3584784 (+) True G80062
TU90328 other upstream 1616643 2466765 ~ 2467171 (+) True G79309
TU88574 other upstream 3130845 946521 ~ 952969 (+) True G77695
TU88411 other upstream 3374265 708833 ~ 709549 (+) True G77533
TU92027 other downstream 745456 4835078 ~ 4836232 (+) True G80845
TU92951 other downstream 1966676 6056662 ~ 6056782 (+) True G81681
TU92936 other downstream 1988940 6079666 ~ 6082367 (+) True G81666
TU93312 other downstream 3246323 7335945 ~ 7338239 (+) True G81994
TU93521 other downstream 3938716 8028338 ~ 8041343 (+) True G82168

Expression Profile