RNA id: CI01000013_04657029_04672057.mRNA



Basic Information


Item Value
RNA id CI01000013_04657029_04672057.mRNA
length 2129
RNA type mRNA
GC content 0.47
exon number 9
gene id CI01000013_04657029_04672057
representative True

Chromosome Information


Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 4656803 ~ 4672742 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTTTAAATTTTGGGGGGTAATTTTGCCTTTTATTTGACAGTGTGAGGAGAGACATCCTGATTTTTGCTCTAAAAAATAGCCTCAGATTCTGACATGGCATGAAACAATTAATAAAATAAAATAAAAAAAATATATAGATTTTTCAGTGTCATATTTTTGGAGAATTTTGCCTTTATTTGACAGTTTGAGGAGAGACAGGAAGAGATATGAAGCACTGTTGCACAATATGTATGTGTGCTGCCCTCAAGGCTATGGATCTGACAAGAAACGGATTCTTGATAAAAACAGACGGCGTTTCCTGCCTTTAATGTGCCCTGGTCATTTGTGTGGTGTGAGAGCTCAACAGACAGGAGAACTCATCCGTGGCAGATTTACTCAAATCAATAACGTGCCTCCTGCCCTCTGTTGTGAAAGTGGCCACTGGGGGCCCCACTGCAGCAACCGCTGTCAGTGCAAGAATGGGGCACTGTGTAACCCCATCACAGGAGCCTGTGTCTGCACAGACGGCTACCAAGGCTGGCGCTGTGAGGATCAATGTGAGCCTGGCTACTATGGCAAGGGCTGCCAGCTGCAATGTCAATGCCTCAACGGTGCCACCTGCCACCACGAGACGGGGGAATGCATATGTGCACCAGGCTACATGGGCCCCATATGTGGAGAGCGCTGTCCCTCTGGAAGTCACGGCCCACAGTGTGAGCAGCGCTGCCCCTGTCAAAATGGAGGAACCTGCCATCACATCACTGGAGAATGCTCCTGCCCTGCTGGATGGACGGGGTCTGTGTGCGCCCAGCCATGCCCATTCGGAAAATATGGGATCAATTGCAGCAAGGAATGCTCATGCCGCAATGGAGGACTGTGTGACCACATCACAGGACAGTGCCAGTGTATGGCAGGATACAGTGGCCACAGGTGCCAGGAAGAGTGTCCGGTTGGCACCTACGGACCCCAGTGTGCCCTCCACTGTGACTGTCAGAATGGGGCCAAGTGTTACCACATCAACGGAGCGTGTTTGTGTGATACAGGATTTAAAGGGCCTCACTGCCAGGACAGGTTCTGTCCTCCAGGACTATACGGTCTCATCTGTGACAGATACTGCCCCTGTAACTCCACCAACACACTCAGCTGCCACCCCCTGACAGGTGAATGCTCGTGTACAGCGGGATGGACGGGTCTATACTGCAATGAGACCTGTCCCCCGGGTTACTATGGAGAAGGATGTAGTGTGCCGTGCCAGTGTGCTAATGGAGCAGACTGCCACGGTCTCACTGGGGCCTGTATCTGTGCCCCAGGCTACACAGGAGGCTGGGAACAAGATTTGAGGGGCCTGCTGCCAGTTCTATTAAACACTGCTCGAGGAGCTTTGGCCAAGGCGTCTGACCGAGATGCAATGGAATTGGGACACAATAATTTATTTCCAGGCCAGCTCTTCCATTTGGACCTATAGAACAGCAAAGGTTAACAATTTGACCGCAGTCTGGTTGAAAATAATAGGGGTAATGGCCACCAAAACTCTCATCCATAGAGTTCTGAGAGAGTGATATTTATAGGGGTGGGAAAGGAACATATATGCTTGTGCTGCTGGTACTGGAGAGAACGCAGGTGGGTAAATGAGGGACCAAATGTGCTGGTAGTACCACATTGAAAGCGCACATGCCACATTCATGAGTGCTTTCATGACACTTCACTAGAATGCACAGATGCACTAGTAGGAATTTTTTTAACGCTTTAAAATAATGTTCATTACCAAAATAACAGTCATTACCATAACACATTTAGTTATTGTATGAATGACCACTATAAGTGGTCTATTAATGCAGATTGTAACTGAAAAAATTAGATGAATTTAAGATATTGTCATGTTGTTATCCAGCATGATTTGAGAATTATCCCACATTTTCAATATGGTCTCAGACTTTTGGACCCCACTGGATATGAAAATGTACCAATCAAACCTTGAAGACATAGCTCTTTGAATGTACTACTGATCTTTGCTAATGTTATTATAAAGTGAATATTTAGCTTCAAAACTTAAGTCCTGCTTTAGCCTGCTTTTAGAGGAGTTTAGTCACCCAGTTGAATGAGTGCTCTCAGGCCTGTGTCAGTGTAATCTGGAGCATTCACGGGTCTCA

Function


GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU92004 lncRNA upstream 78890 4577531 ~ 4577913 (+) True G80826
TU92010 lncRNA upstream 83471 4572802 ~ 4573332 (+) True G80832
TU92009 lncRNA upstream 84703 4571764 ~ 4572100 (+) True G80831
TU92008 lncRNA upstream 85250 4571198 ~ 4571553 (+) True G80830
TU92007 lncRNA upstream 89800 4566758 ~ 4567003 (+) True G80829
TU92013 lncRNA downstream 37065 4709807 ~ 4712529 (+) True G80834
TU92057 lncRNA downstream 45341 4718083 ~ 4718297 (+) True G80875
TU92062 lncRNA downstream 97568 4770310 ~ 4770538 (+) True G80879
TU92024 lncRNA downstream 143728 4816470 ~ 4818947 (+) True G80842
TU92032 lncRNA downstream 153576 4826318 ~ 4828164 (+) True G80850
CI01000013_04612468_04618550.mRNA mRNA upstream 37803 4612054 ~ 4619000 (+) True CI01000013_04612468_04618550
CI01000013_04542059_04550082.mRNA mRNA upstream 106496 4542059 ~ 4550307 (+) True CI01000013_04542059_04550082
CI01000013_04505188_04527744.mRNA mRNA upstream 128931 4505145 ~ 4527872 (+) True CI01000013_04505188_04527744
CI01000013_04425884_04426805.mRNA mRNA upstream 229793 4425748 ~ 4427010 (+) True CI01000013_04425884_04426805
CI01000013_04344339_04347938.mRNA mRNA upstream 308720 4344339 ~ 4348083 (+) True CI01000013_04344339_04347938
CI01000013_04673313_04707104.mRNA mRNA downstream 474 4673216 ~ 4707470 (+) True CI01000013_04673313_04707104
CI01000013_04720501_04724747.mRNA mRNA downstream 47759 4720501 ~ 4724940 (+) True CI01000013_04720501_04724747
CI01000013_04750261_04754885.mRNA mRNA downstream 77519 4750261 ~ 4756045 (+) True CI01000013_04750261_04754885
CI01000013_04760068_04760352.mRNA mRNA downstream 87265 4760007 ~ 4760374 (+) True CI01000013_04760068_04760352
CI01000013_04774039_04780331.mRNA mRNA downstream 101297 4774039 ~ 4780762 (+) True CI01000013_04774039_04780331
TU91262 other upstream 590974 4064933 ~ 4065829 (+) True CI01000013_04051081_04064651
TU91155 other upstream 1072019 3584008 ~ 3584784 (+) True G80062
TU90328 other upstream 2189632 2466765 ~ 2467171 (+) True G79309
TU88574 other upstream 3703834 946521 ~ 952969 (+) True G77695
TU88411 other upstream 3947254 708833 ~ 709549 (+) True G77533
TU92027 other downstream 162336 4835078 ~ 4836232 (+) True G80845
TU92951 other downstream 1383556 6056662 ~ 6056782 (+) True G81681
TU92936 other downstream 1405820 6079666 ~ 6082367 (+) True G81666
TU93312 other downstream 2663203 7335945 ~ 7338239 (+) True G81994
TU93521 other downstream 3355596 8028338 ~ 8041343 (+) True G82168

Expression Profile