RNA id: CI01000013_06209318_06233289.mRNA



Basic Information


Item Value
RNA id CI01000013_06209318_06233289.mRNA
length 1054
RNA type mRNA
GC content 0.43
exon number 4
gene id CI01000013_06209318_06233289
representative True

Chromosome Information


Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 6209096 ~ 6233383 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TTATAAAAATGTAATCCCTCAATGTATTTGTCAATATAGATGCATAATCCACTGGAATCTTTGCATTGCATTCTAGTCCATGCATGCAAATGGACAAGTTCCTGTCACTGGTGTAGTAATATATGTACATAATGATGGCCGGTCCACTTTCATCTCAGCACATGAAGCCCAACAGTGGAGTCACAGCTGCTCAGCTTATTAGCTCATTGAATTAGACCAATCATGAGCCAAATGGAGGAAAGACCGGACACAGTACCACGCAACGCTTATAAATCAGTCTTCCACTCTAATGGCTGTTTCAGCTCTTCTTATTACACAGCTGATCCTATGCCACAGCAAAAAGTTTTCACGTATATTTTGGCTAGAAAGGGAGGAAATTGGCGATGGTCTCCAAGGCAGGAAGCTCATTTAGTTCCAATGGAGGAATGCATTCCCTACAAAAAGAGGCCAGCTTTCTTTAAGACCTTGGTGAAAGGAAAAGGCTGTTATCTGTCAGTAACACAAAACACGTACCTCCCTTGCAGAATCTCAGCCACGCGAAATAATCAGCCAAACAGGAGAGCTACTCCCGCTGGAAATCACGGTAATAAGCCCACCATCCCCTTTCGAAATAACAGCTGGTTATGTTTTTCTAATGGAGAAGCACCATCACAAGCCGTCGCTTCTCGTTCATCAGCAGCTGTTAGCTGTGACTGGAGAATTTATGCTCCTGTCTCGTCACCCTCACACCTGGATGCTGAGACGGGGGCAAGGGGTCCAGGTCGGCTTAATAGTGACAACTCTCATGCTGATGATTCTAGGGTGATACATGTGATACGCACCATCTGCCGAAGGAACCTCAACTATCATGCTGAAGTATTAGGCTGTTTGGATTATTGGGATAGGATATTTGTCCTCAACACAAGCTGGGATAAGGAGCTAAATGATAAACCTAACGATATCAGTGTTGTACAGGAGTAAGCATATTCAGAGGAATAGGTTTTTACCACTATTGGGGGTTGAAATGAATTTTCATTCAACGTTCTTCTTATGCTTCCCAGGCAAAGAACTAAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU92942 lncRNA upstream 124201 6083474 ~ 6084895 (+) True G81672
TU92935 lncRNA upstream 127052 6079666 ~ 6082044 (+) False G81666
TU92943 lncRNA upstream 149218 6059792 ~ 6059878 (+) True CI01000013_06050285_06059640
TU92947 lncRNA upstream 158706 6028609 ~ 6029518 (+) True G81677
TU93021 lncRNA downstream 97657 6331040 ~ 6331644 (+) True G81738
TU93037 lncRNA downstream 118522 6351905 ~ 6352119 (+) True G81754
TU93045 lncRNA downstream 148439 6381822 ~ 6426042 (+) True G81762
TU93063 lncRNA downstream 154456 6387839 ~ 6388687 (+) True G81780
TU93048 lncRNA downstream 215180 6448563 ~ 6449178 (+) True G81765
CI01000013_06132773_06163282.mRNA mRNA upstream 45459 6132565 ~ 6163637 (+) True CI01000013_06132773_06163282
CI01000013_06076169_06080164.mRNA mRNA upstream 128735 6075400 ~ 6080361 (+) False CI01000013_06076169_06080164
CI01000013_06050285_06059640.mRNA mRNA upstream 148827 6049864 ~ 6060269 (+) False CI01000013_06050285_06059640
CI01000013_06038814_06043689.mRNA mRNA upstream 163860 6038814 ~ 6045236 (+) False CI01000013_06038814_06043689
CI01000013_06025196_06025887.mRNA mRNA upstream 182256 6024703 ~ 6026840 (+) True CI01000013_06025196_06025887
CI01000013_06278898_06283356.mRNA mRNA downstream 45515 6278898 ~ 6285154 (+) True CI01000013_06278898_06283356
CI01000013_06311729_06313001.mRNA mRNA downstream 78346 6311729 ~ 6314124 (+) True CI01000013_06311729_06313001
CI01000013_06405275_06423872.mRNA mRNA downstream 170813 6404196 ~ 6424521 (+) True CI01000013_06405275_06423872
CI01000013_06440333_06446814.mRNA mRNA downstream 206243 6439626 ~ 6447195 (+) True CI01000013_06440333_06446814
CI01000013_06548714_06565582.mRNA mRNA downstream 314586 6547969 ~ 6566123 (+) True CI01000013_06548714_06565582
TU92936 other upstream 126729 6079666 ~ 6082367 (+) True G81666
TU92951 other upstream 149600 6056662 ~ 6056782 (+) True G81681
TU92027 other upstream 1372864 4835078 ~ 4836232 (+) True G80845
TU91262 other upstream 2143267 4064933 ~ 4065829 (+) True CI01000013_04051081_04064651
TU91155 other upstream 2624312 3584008 ~ 3584784 (+) True G80062
TU93312 other downstream 1102562 7335945 ~ 7338239 (+) True G81994
TU93521 other downstream 1794955 8028338 ~ 8041343 (+) True G82168
TU93966 other downstream 3095946 9329329 ~ 9334948 (+) True G82581
TU95556 other downstream 3368228 9601611 ~ 9602235 (+) False G84005
TU95558 other downstream 3368228 9601611 ~ 9602184 (+) False G84005

Expression Profile