RNA id: TCONS_00001179


Basic Information

Item Value
RNA id TCONS_00001179
length 2023
RNA type mRNA
GC content 0.50
exon number 12
gene id XLOC_000705
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 54037077 ~ 54062112 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGAGATGCTAGTTTAGTCACGCAGGGATAATTTAACCAGTTTGTAttcatagatatttataaaaGCACTATTTCAATGCGGAAACTGCTTAAATGACCGCGAATATGTATGTATTCAATATACGACTAGATCGTCGAGCAGTTCTATGACAACATACTTGCAGGAATTGAGCAACTAAACCAGTTTCTTCCTTCTTTCATGCCAACATCCGGATACACACATGTCGGTTGACCTTCTGAACGGTAAAAAGGGATGGATGTATTTGCTGGATGAAGATGAGGAGTGGAGAAAGTTCTGGTTTGTGATCACTGACTCTGGATTAAGATACTATAGGGACTCTGAGGCTGAAGAGAGAGATGAAGCAGATGGTGAGGTTTACTTGCGCCATTGTTTGCGAGTGGAGGAATTTGATGCAGACAAAAACTATGGACTTCAGTTGCATATGCGCGATGGACTGGTGACGCTGTCGGCGATGACCTCCAGAATCAGGAGGAACTGGATCGACACTTTGAGGAGGAAAATCTCCTTCAGGGATTCAGCGGACAGCATACAACACCTAGACAACAGTGACATCAGTGACAGAGAAAACTCCAGTTCCCAGAATGCACCATCACAAACCTCTCCTGCGCCTCGTGAGCCGTGCTCAGATGATGGTGGTTTGTATGAAGATGAACCCGACATCACTTGCTCTCCTTTAACCAATCGTAGAGAAGCAGGCGAGGGTCGGGACCGAGAGCATGAGCGGCGTCTGGAGGACCGAACCAAGTGGTTCCAGGAGGGGGTTTCCGACAGGGAGGGCGACGATCCGTGGGATAAAGTGGAGCTGAAGAAAGGGGGCACTCCAGTGGTTTTGACCCAGCTGCAGGTTCCTAAAGCCAAGACGGGGCCCGACATCGAGAAGAAGTGGGAAGACTTTGAGCAGCTTCCAATTGGAGAGAAAAGGTCACTGGTCGGTTCCCAGAATCCACAAGCGGCAAATGAGGCCCTTCAGAGAGAGGTGTTGTCTCTGAGGCAGCAGATCGAGTCTCTCCGTCAGGTGCGTGTCGGAGCTCTCTGTGGTCCTGAAGCTCCCTGCGCTCTCAGACTGCAGCAGATGGAGGAAGAGCACAGAGAGAGACTGAAGGAGATTCATGAGCAACATGAGCGAGAGCGCAGAGACATGGAGACTGAAAAACAGAGGCTGCTGCAGGAGGAGGCCAAAAACACACTCCAGGCTATGGAGGCTCTGAGGAAAACACACCAGGAGGAGATCGAGAGGCTGAAGGGTCACGGAGGAGAAGAGTTAACAGACCCGTCCATCAAACAACAgctgcaTGAGTCTCTGTCTCTGCAGCGTGAGCTGGATGGTCTGTCGCAGCGTTACTCGCAGCAGTGTGTGGAGCTCAACCGCATCCAGAGCGGCACTGACGAGAGAGACGGACAGATCCGACAGAAGGAGAGAGACATGGAGCAGCTCCGCATGGAGAACCAGGAACTGCAGGCGCGTCTGACGGAGGAGATAAGCCTCATGCGATCCTTCATCACAGGTCAAAGGTCAGGCGTTGTTCCCCTTGGCAGCTACGAAAGAAGCACCTCCGAATTGGAGatgttaCTGAAGGTGAAGGAGAGCGAGGTGGAGTTTCTGCACAAGGAGATCAGCTGTCTCAGGAAAGAGGTCCAGACTCTCACTAAGGAGAATGAAGCGTTGGGCGAGCGCTATAAAGAGGTCTATGTGGAGCTGAGCGAGTTAAGAGGCCGCAGTGAGAGAGACATCAACGCACTCAAACAACACCTCAAACTCACTGACGCGGCTCTGGAGGAGGGCCGTCTCCTGGGCAACAGCGACAACCAATGAGAACGCAGCATCACTTCACATGCAAACATTAGCACTGGGACGCTTTCTGTTATGAGGAATTCATTTTTGTTAGAAACTACAATGGTGCTAAATATCGGAAACTCTTAAagcaaaatatgtatataaacatgCCTCTGTTGAGAGTATGTATTTTGATCGTTATgtgaaaataaacacaaatccaGACCA

Function

GO:

id name namespace
GO:1900026 positive regulation of substrate adhesion-dependent cell spreading biological_process
GO:0007015 actin filament organization biological_process
GO:0015629 actin cytoskeleton cellular_component
GO:0051015 actin filament binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-110411-40 Predicted to enable actin filament binding activity. Predicted to be involved in actin filament organization and positive regulation of substrate adhesion-dependent cell spreading. Predicted to be active in actin cytoskeleton. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 28. Orthologous to human TRIOBP (TRIO and F-actin binding protein).

Ensembl:

ensembl_id ENSDART00000149760

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003176 lncRNA upstream 54787 53982614 ~ 53988776 (+) True XLOC_000703
TCONS_00001173 lncRNA upstream 95055 53946000 ~ 53948508 (+) True XLOC_000701
TCONS_00003175 lncRNA upstream 177726 53864528 ~ 53865837 (+) True XLOC_000699
TCONS_00002881 lncRNA upstream 272824 53765375 ~ 53770739 (+) True XLOC_000697
TCONS_00003174 lncRNA upstream 273816 53760848 ~ 53769747 (+) False XLOC_000697
TCONS_00003177 lncRNA downstream 215131 54277243 ~ 54469289 (+) True XLOC_000712
TCONS_00003178 lncRNA downstream 339821 54401933 ~ 54404147 (+) True XLOC_000713
TCONS_00003179 lncRNA downstream 549726 54611838 ~ 54613479 (+) True XLOC_000715
TCONS_00003180 lncRNA downstream 636061 54698173 ~ 54700755 (+) False XLOC_000721
TCONS_00003181 lncRNA downstream 636071 54698183 ~ 54700755 (+) False XLOC_000721
TCONS_00001177 mRNA upstream 17211 54013465 ~ 54026352 (+) True XLOC_000704
TCONS_00001176 mRNA upstream 17383 54013457 ~ 54026180 (+) False XLOC_000704
TCONS_00001174 mRNA upstream 79630 53954230 ~ 53963933 (+) False XLOC_000702
TCONS_00001175 mRNA upstream 80923 53954235 ~ 53962640 (+) True XLOC_000702
TCONS_00001172 mRNA upstream 90031 53945934 ~ 53953532 (+) False XLOC_000701
TCONS_00001181 mRNA downstream 7338 54069450 ~ 54084665 (+) False XLOC_000706
TCONS_00001182 mRNA downstream 7354 54069466 ~ 54084264 (+) True XLOC_000706
TCONS_00001183 mRNA downstream 53727 54115839 ~ 54118052 (+) True XLOC_000707
TCONS_00001184 mRNA downstream 62097 54124209 ~ 54126428 (+) True XLOC_000708
TCONS_00001185 mRNA downstream 74977 54137089 ~ 54146461 (+) True XLOC_000709
TCONS_00001166 other upstream 655682 53387765 ~ 53387881 (+) True XLOC_000690
TCONS_00001160 other upstream 675529 53364510 ~ 53368034 (+) True XLOC_000689
TCONS_00001154 other upstream 982366 52999832 ~ 53061197 (+) False XLOC_000682
TCONS_00001126 other upstream 1908061 52130164 ~ 52135502 (+) False XLOC_000662
TCONS_00001119 other upstream 2359945 51683519 ~ 51683618 (+) True XLOC_000655
TCONS_00001186 other downstream 123927 54186039 ~ 54186156 (+) True XLOC_000710
TCONS_00001221 other downstream 1066353 55128465 ~ 55128579 (+) True XLOC_000733
TCONS_00001233 other downstream 1231513 55293625 ~ 55297251 (+) False XLOC_000739
TCONS_00001304 other downstream 3285786 57347898 ~ 57355033 (+) False XLOC_000813
TCONS_00001335 other downstream 4098039 58160151 ~ 58173589 (+) True XLOC_000837

Expression Profile

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