RNA id: CI01000013_07703864_07718313.mRNA



Basic Information


Item Value
RNA id CI01000013_07703864_07718313.mRNA
length 1523
RNA type mRNA
GC content 0.47
exon number 5
gene id CI01000013_07703864_07718313
representative True

Chromosome Information


Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 7703761 ~ 7719073 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AGAAGGAGGCTAGCCTGGCTCTTGGAGCCCCTTTTTCAGCATGCACACTGATTATGACCCCAGTGATCTGCTTAGTCATCCAAGGCCTGCTCTCTGCCCTTTAAACAGAGTGGCTAAGTGCCAGCCGTTTGGCCCTGCTGAATGGTAATGTCTTAAGGTAAACAGTGTTGTTTTCTTCTGCTCTGTCCTGATGTGCCCTTTATTCACGCTGCAGTGGGTTTGCTTTATGTTGGACTCTTTATGTTTAGGCTATATTCCTTTTTAAGCTCAGGAGACCCATGTTTGTGTTCTAATGCTGCAAGATAAAGTTATACCAAACTTTACTTGATTCTCTGTTGCAAAGGTTAGAAAAGCTATTAGTTAAGTTGGACAGATATGCTATCATCTCTTGCTGCATACGAGTAGTTTATTATGGCTAAACCCAGTTTGAATCATAGGCCAAGATCCCTCAGTGGTGCATTGTGTTTACACATCTGGAGTTGGAACCACACTTACGAACCCTGTCAGACCTGCCTGCTAAATTACAGCAACAATGCAGATACCATCCAAGATTGAGTGTCTGTTTGCTGTGCCCAGTGCCCTTTTTTTCAGCTCATGCACCAACCCTTATTCATTGGCCCAGCAGGTGTGATGTGTCCAGATTCCAGATGGTTGTGCAGGCTGCTTCTCCCACTGGCAAGCCAGATGCAGCTGTTTGGAAGGCAGGCTGATTGATTTCGCTGCAGCCTCTCGCTGTGACCAGGCCTGGGTCACTCCTGCTATGCCCTCCGTGTGCACTGACATTTACCACCGAGCAGAGGACTCAGTCCAGGCTAGAGAAGGGAAAGATGCAGGAACGTTCTCTTGCCCAGCTGGGGGCGGTTCACAAGACATCCTGGTCTTTTCATCCTGGTTTTGGCCAGATTGGAAACTGAGACATCAATTGGGAGAAGGGATTTTTGAGGTAGTGACAGTGAAGAAGCATACAGTCTCACAGTCAGAATGCTCATCTGAACACACAGAAGAAACTATTGAGCAGATCTCTGAAATTCCGTCTGTGTGTCTAGAGTTGTTATGTACTGTAGAACTGAGAGGAGGAACAGGGCTGTATATTCAAGGACGGCATGCGGGGTGTGACATTGTCAGAAAGAATCCCCGCTTCCCTTCAACTGAAAGGGTTGTGTGCACTGGAGCGCAGGAAAAAGAAGAGAAGGCTGAATGTGTACCGGGATTTCAGGAGAAGGAGTACCAGGTGGAGTACAGTGGAGGGTTCCTCAAAGACGTTCCTCTGCTGCAAGGTACGGCAATGATGTCATCAGCGGTGAATGAGAGGGTTCAGCGGCGTAGAACTTTCTGCGTAAAGATTCACGTCGAGATTCTGGCAGACCATGCCGCCATACAGACAGATTCTGTCTGCGTCATATTTTTCAGAGGCAGTTAAGACAGATTTCATCAAAACACTTTAGAACGGCCAACATGTGAGAATGTGAGAACTGCTAATAATGGAGTTGTTTCCTCACAGGTCTCCACATTCACACAATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU94768 lncRNA downstream 176963 7521782 ~ 7526798 (-) True G83318
TU94751 lncRNA downstream 184214 7471754 ~ 7519547 (-) True G83301
TU94730 lncRNA downstream 260462 7442899 ~ 7443299 (-) True G83280
TU94735 lncRNA downstream 265004 7438226 ~ 7438757 (-) True G83285
TU94719 lncRNA downstream 282110 7421296 ~ 7421651 (-) True G83269
TU94662 lncRNA upstream 54558 7773631 ~ 7798954 (-) True G83212
TU94846 lncRNA upstream 100081 7819154 ~ 7819365 (-) True G83393
TU94848 lncRNA upstream 102627 7821700 ~ 7822011 (-) True G83395
TU94661 lncRNA upstream 149697 7868770 ~ 7900168 (-) True G83211
TU94937 lncRNA upstream 237889 7956962 ~ 7958056 (-) True G83475
CI01000013_07641497_07662151.mRNA mRNA downstream 40014 7640917 ~ 7663747 (-) True CI01000013_07641497_07662151
CI01000013_07463570_07636742.mRNA mRNA downstream 67019 7463570 ~ 7636742 (-) True CI01000013_07463570_07636742
CI01000013_07455026_07456463.mRNA mRNA downstream 247255 7454241 ~ 7456506 (-) True CI01000013_07455026_07456463
CI01000013_07339918_07367774.mRNA mRNA downstream 335987 7339731 ~ 7367774 (-) False CI01000013_07339918_07367774
CI01000013_07293239_07332640.mRNA mRNA downstream 371101 7292985 ~ 7332660 (-) True CI01000013_07293239_07332640
CI01000013_07804879_07805627.mRNA mRNA upstream 85793 7804866 ~ 7805665 (-) True CI01000013_07804879_07805627
CI01000013_07989784_08013498.mRNA mRNA upstream 270638 7989711 ~ 8013936 (-) True CI01000013_07989784_08013498
CI01000013_08016159_08020344.mRNA mRNA upstream 297042 8016115 ~ 8020344 (-) True CI01000013_08016159_08020344
CI01000013_08042921_08047883.mRNA mRNA upstream 323137 8042210 ~ 8048460 (-) True CI01000013_08042921_08047883
CI01000013_08059677_08060143.mRNA mRNA upstream 339895 8058968 ~ 8060143 (-) True CI01000013_08059677_08060143
TU94655 other downstream 321401 7380297 ~ 7382360 (-) True G83206
TU94120 other downstream 1819389 5884149 ~ 5884372 (-) True G82727
TU92796 other downstream 1959723 5739526 ~ 5744038 (-) True G81547
TU92232 other downstream 2953200 4748809 ~ 4750561 (-) True G81032
TU92144 other downstream 3144858 4556868 ~ 4558903 (-) False G80954
TU95233 other upstream 1587963 9307036 ~ 9322844 (-) True CI01000013_09309438_09335834
TU96930 other upstream 2760788 10479861 ~ 10480700 (-) True G85170
TU96941 other upstream 2844386 10572377 ~ 10572440 (-) True G85180
TU96958 other upstream 2873131 10592204 ~ 10595337 (-) True G85188
TU97193 other upstream 3315959 11035032 ~ 11035466 (-) True G85401

Expression Profile