RNA id: CI01000013_09007324_09008538.mRNA



Basic Information


Item Value
RNA id CI01000013_09007324_09008538.mRNA
length 1493
RNA type mRNA
GC content 0.53
exon number 1
gene id CI01000013_09007324_09008538
representative True

Chromosome Information


Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 9007257 ~ 9008749 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AATGCGTGATGTACAAACAACATGGCTTATAACAGGTAAGGACAGGAAGTGATGTGAGGAGAACCGGCAGTGTTCAGTATTCGGGAGATGGCTCCCTCTGGCGGTCGGAGGAATGGATGGCAGATGCAGATGTTACAGGTTAAAAGTGGAGTTTAGAAAGACGATAACCCAGGGTCAAACACATTGAAAAGCCTTGTGTTTCTAACCAGTTATGAAGATGGTCACGTCCTTCCATGATGAAATGAAAGGTACCGTCCAGTACGATGGCTCATCTTTGGAACCTTTCCCGATCCGAAGCGGTGTGAAGCAAGGCTGCGTCCTCGCCCCGACACTCTTCGACATCTTCTTCTCCATGCTACTGCGCCACGCCTTCAGTCAGTCAGAAGATGGTGTCTTTATCCACACTAGGAGCTATAGCAACCTTTTCAACCTTGCACGTCTGCGTGCAAAGACCAAGATGCGCAGGGTCCTGATTAGGGAGATGCTGTTTGCTGATGACGCCGCCCTGACTGCCCATACCGAGGAAGCACTACAGCATCTCATCAGCAGCTTCGCTCGCGCCTCTGATGAGTTTGGGCTGACCATCAGCCTGAAGAAAACAAACGTTATGGGCCAGGATGTCAGCAGCATCTCCATCGGCGATTGCACCCTCGAGGTAGTGGAGGACTTTACATATCTTGGCTCCACTATCTCCAGCAACCTCTCTCTGGACAACGAGCTGAACACCAGGATCGGCAAGGCATCAATAGCGATGGCCCGCCTGACCAAGAGAGTGTGGAACAACAGCATGCTCACCATCAACACTAAGATGAAAGTGTACCAGGCCAGTGTCCTCAGCACTCTTCTTTATGGCAGTGAGACATGGACTATGTATACCTGGCAAGAACGCAGACTTAAGTCTTTCCATCTGCGCTGCCTGAGGAGGATCCTGGGCATCACCTGGCAGGACCATGTCCCAAACACTGAAGTGCTGGCTCAGGCAAAAACATTCAGCATGCACGCACTACTCTCACAAAGACGCCTACGCTGGCTCGGCCATGTCTGCCGAATGCAGGATGGCCAGATTCCTAAGGACATCATGTATGGTGAGCTTGCCTCTGGCACTAGACCAACAGGCAGACCAGCGCTCTGGTACAAAGACGTCTGCAAGCGTGACCTGAAAGCCGGAAGCCTGAATCCCGCAGACTTGGAAGCTGCCACCGCAGACCGTGTCAGCTGGCGGCTCGCCGTAAGGACCAGCATAAGGCTGAGCGAGGGAAAGGGAGAGGAACAGCGGGAGGAGAAGAGGCAGCGTGGACGGCAGAGAGCAGAGCCAATGCCCACAGAAGCAGTCACAGGCTTTACTTGTAGCAACTGCAACAGACTCTGCCGCTCTCGTATTGGACTGTTCAGCCACAGCAGGCACTGCAATTCCACAACAGACTGACTTGGGCGCAGATACTCCATTGTCTCCAGAGACCGAAGGATGCCAGAGGAATTTAACATAAAATATA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU95305 lncRNA downstream 101695 8905313 ~ 8905562 (-) True G83776
TU95297 lncRNA downstream 112963 8893989 ~ 8894294 (-) True G83768
TU95296 lncRNA downstream 115756 8891296 ~ 8891501 (-) True G83767
TU95122 lncRNA downstream 187943 8717223 ~ 8819314 (-) True G83641
TU95291 lncRNA upstream 198213 9206962 ~ 9207761 (-) True G83762
TU95294 lncRNA upstream 200069 9208818 ~ 9209453 (-) True G83765
TU95417 lncRNA upstream 209103 9217852 ~ 9218423 (-) True G83883
TU95418 lncRNA upstream 215522 9224271 ~ 9225573 (-) True G83884
TU95419 lncRNA upstream 219216 9227965 ~ 9228672 (-) True G83885
CI01000013_08950324_08962808.mRNA mRNA downstream 44449 8949978 ~ 8962808 (-) True CI01000013_08950324_08962808
CI01000013_08732651_08797549.mRNA mRNA downstream 209708 8732651 ~ 8797549 (-) True CI01000013_08732651_08797549
CI01000013_08616374_08648611.mRNA mRNA downstream 358646 8616204 ~ 8648611 (-) True CI01000013_08616374_08648611
CI01000013_08555865_08573521.mRNA mRNA downstream 433736 8555208 ~ 8573521 (-) False CI01000013_08555865_08573521
CI01000013_08418098_08441411.mRNA mRNA downstream 565506 8417837 ~ 8441751 (-) True CI01000013_08418098_08441411
CI01000013_09293519_09305846.mRNA mRNA upstream 284384 9293133 ~ 9305846 (-) True CI01000013_09293519_09305846
CI01000013_09309438_09335834.mRNA mRNA upstream 300623 9309372 ~ 9336077 (-) False CI01000013_09309438_09335834
CI01000013_09336832_09367107.mRNA mRNA upstream 327823 9336572 ~ 9367304 (-) True CI01000013_09336832_09367107
CI01000013_09444914_09445539.mRNA mRNA upstream 435676 9444425 ~ 9446553 (-) True CI01000013_09444914_09445539
CI01000013_09734984_09737488.mRNA mRNA upstream 726138 9734887 ~ 9737488 (-) True CI01000013_09734984_09737488
TU94655 other downstream 1624897 7380297 ~ 7382360 (-) True G83206
TU94120 other downstream 3122885 5884149 ~ 5884372 (-) True G82727
TU92796 other downstream 3263219 5739526 ~ 5744038 (-) True G81547
TU92232 other downstream 4256696 4748809 ~ 4750561 (-) True G81032
TU92144 other downstream 4448354 4556868 ~ 4558903 (-) False G80954
TU95233 other upstream 298287 9307036 ~ 9322844 (-) True CI01000013_09309438_09335834
TU96930 other upstream 1471112 10479861 ~ 10480700 (-) True G85170
TU96941 other upstream 1554710 10572377 ~ 10572440 (-) True G85180
TU96958 other upstream 1583455 10592204 ~ 10595337 (-) True G85188
TU97193 other upstream 2026283 11035032 ~ 11035466 (-) True G85401

Expression Profile