RNA id: CI01000013_09178561_09180465.mRNA



Basic Information


Item Value
RNA id CI01000013_09178561_09180465.mRNA
length 2647
RNA type mRNA
GC content 0.46
exon number 2
gene id CI01000013_09178561_09180465
representative False

Chromosome Information


Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 9177107 ~ 9195268 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATATAAAAATAAAACACATGTTTGGTGTGAGCGCACAGCAATGCATCAGGTACTTAAGATGTAACTCTACGTTCCACAGAAAAGCCTGAAGTATCTTCAAGCTACTATCCAGTGTCAATGCTTGAAATGGTGCTATAATTCCTCAGGCTGATACACTGCCAATTTATCCATGCTTCTTACATGGCAACGGGAGAGTATGGATAAATGGTTTTAAAGTAGTAAACACCGGTCACACATCAACCTCCAAATATAATCACAGGTTTCATTTCACTGCAACATTTCTGTAAATATCACATAGTTTATATTTGATTAGCAAATGAATGCAACACACGGATGACTTCGAAGTGGTTAAATTATTAAATTCTGATCCTTATTTTTGCACTTATTGCAACTCAAATCTCCTTGTTTTTATTAACATATCCACAGTCCTGTACTATAGCCAAATGTTCAGCTGCATGCTTGGTCTCATATTCATCTCCCTGCCCCATCCAACCCCCCAAGCCCTCCACCCCCCGCCTTGCCCCGGTCCCACTCCTCCTCCATCAGCTCATGATTTCATTTAATTCATCGTAGCCCTCCCAGACTCTCCCCAGGCCAGTCAGCGCAGTTGACAGCACTGAACTTGTATAGGCATAAAGCACAGTGATGATAAGCACATTAAAGCTGCTGTATTGGCTAGGGGAGGGTCTAGCTCCAGTAGCTGCTGCCTTATTGGTGGTCTGAGTGGCAGGGGAGGGGCTGGGAGGAGTACAGGCAGAGAGAGAGAGAGTGAGGTGAGAGCTTTGCGCTAGGTTGGGAGGGAATGCCCACTAGATGCGGCTGCTGATAATAGCGTGTATCAGCACCAGAGCAGTGATTGAGAGCACAGACAGAGAGAGGAGGAGAGAGGAGCAAGGAACAGCATGCCGTGCCATAGAGTGGTTAAATCAGAGCAGCGTGATTGATTCAGGCAAACAAGGATAAAAAAAAAAGTAAAAGGAGATCTAGAGAGTCTCTCGGAGCGCAAAATCCTGAGAGGAGAACGGGGGTGGAAGTTAGAAGGCTGTGGGAACTCATCAACTCCTTGTGGAAAGGCACAGCTGAGGTCAGCAGGCAGGAGTGTGGGATCGAGCAGCAGCTGAACGAAGCCAGGCTGGGGGTGGACACTCTTTTAGAGGGGTAAAGAGCGGCGTAGGGTGAAGGAATACTGCTGAAACTTCAGTTACACTCAACGTGCACCTGCCCGTGGGAGTAACGCTTCTGGATATTACAGCAAGGCTACAGGGCAAGCTGCCACATCCACTAGAGCGATTTTGCAAAGCCACTGTCTGGTTGACTTAATCCTGATCTTTTGTGTGAAAAAGAAAGACTAGCATTTTTGTAGCACTAGAGCGCAAGTTCAAGGTTCTGCTCAAGGGCTATTCTGAGAGACATGATAGAGAATGAAATAAAGAGCGCGGCTTCCGTTCCAGAGCATGGAGAAGTCAAGTAGTGAGGAATCTGCTATCCACCGTAGCCCCTCTGTGGACAGCCGCGACTCAGACTTTGCCCAAGCCTCCACCTCCGGACGGCCGTTCGGAGGACGAGGCTTTACCGCTGGAGCCTTTTACGGGTCCACTGGCCCACGTGCGCAAACTGCTGCTCAGAGTGGGGTGGCCGGCGACGACAAAGGCAGTAATAAGTACAAGGCTCCTAAAGGCAGCAAATACGTGGTCTTTTATCTGGATCTATCCTTTGTGTTCCTTCTAGAGTTCAAGAAGTGCAACATGGCGAGAGGCTGTCTGTGCTGTCTGAAATACATGATGTTTGTCTTCAACCTCATCTTCTGGGTCATTCCAACATGGACGGCAGTCAAAGTCCTAGAACTATGCGTGTGCAGTTACCAGCGTGTGTGTGATTTAGGGTTACGACATTCCTCAGAGAGTGATGGCGATCGAAGCTTGGTGATCCTAGGAGAGTGTGACTCTGTATCATGACACCCCTGGGACCACGCTCCTCTTGCTTTGGCGCTCCAGGAATTGCAAGGTTACCATTCTGTGGAACGCCGATGCCTGTCACCCCATCCGCTTTAGAGAGCCAGGTGCTGCCGCCTGCTGCTTCTTCACAGAGCTTACGGTTGTAACTTGAGGCACTAGGTAAATACAAGCGTGAACCTCAGGCATGTCATCAGGCTCCTGTACAGAACTTCAGCAGTTGCTTGTGACCATCTGGCTTGTCTTTCTTACGTGGATTAGCTTGGTTTGAGCTGGGCAGCTTCAGCACAGATTAGAGCATTTAGTGGTGAGCTTGGTCACACCATGCTGTGTTCCTGATTCTGTAACGGGTCAGCACTCACCATGTCTAAATGACCCACCACGTTTTATTTATTATTATTATTATTATTTATGGGGATTGCTTGTAATTTGCCCCACTGGCACCAAGCGGAATGTGACACATACTACTTGACAAGTTACTATTTGTCTCTTCAGTTCGTATTTACATTTAGAAAAGAGTGTTTTAAACTGTTGCATGCTGTTTTGCAAAGTAATACTATTGTATTGTTATTGTACTAAAGCTAAAACAATATATTCTCAGGAAAATATTTATTTAGTATAAATATATGTATCTTTATACATATTTTTAATCTTTAAGGTATCTTAAAATTGCAATTTGTAAAGCACTTTTCACA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU94005 lncRNA upstream 38662 9136983 ~ 9138445 (+) True G82620
TU93997 lncRNA upstream 102531 9065133 ~ 9074576 (+) True G82612
TU93938 lncRNA upstream 194606 8982223 ~ 8982501 (+) True G82557
TU93907 lncRNA upstream 266481 8910397 ~ 8910626 (+) True G82526
TU93882 lncRNA upstream 331047 8834072 ~ 8846060 (+) True G82503
TU94023 lncRNA downstream 55831 9236988 ~ 9237208 (+) True G82638
TU94024 lncRNA downstream 58224 9239381 ~ 9239585 (+) True G82639
TU93963 lncRNA downstream 185690 9366847 ~ 9386234 (+) False G82580
TU93964 lncRNA downstream 185690 9366847 ~ 9388557 (+) True G82580
TU94044 lncRNA downstream 189351 9370508 ~ 9372174 (+) True G82659
CI01000013_09075883_09113011.mRNA mRNA upstream 63824 9075825 ~ 9113283 (+) True CI01000013_09075883_09113011
CI01000013_08943859_08944315.mRNA mRNA upstream 232482 8942838 ~ 8944625 (+) True CI01000013_08943859_08944315
CI01000013_08925040_08937556.mRNA mRNA upstream 238184 8924561 ~ 8938923 (+) True CI01000013_08925040_08937556
CI01000013_08652173_08660558.mRNA mRNA upstream 516036 8652173 ~ 8661071 (+) False CI01000013_08652173_08660558
CI01000013_08530191_08551478.mRNA mRNA upstream 625486 8529349 ~ 8551621 (+) True CI01000013_08530191_08551478
CI01000013_09243644_09260619.mRNA mRNA downstream 62487 9243644 ~ 9260619 (+) True CI01000013_09243644_09260619
CI01000013_09279917_09290301.mRNA mRNA downstream 98760 9279917 ~ 9290760 (+) True CI01000013_09279917_09290301
CI01000013_09430170_09443518.mRNA mRNA downstream 249013 9430170 ~ 9444023 (+) True CI01000013_09430170_09443518
CI01000013_09681047_09683275.mRNA mRNA downstream 499890 9681047 ~ 9683433 (+) True CI01000013_09681047_09683275
CI01000013_10261599_10283287.mRNA mRNA downstream 1079114 10260271 ~ 10283967 (+) True CI01000013_10261599_10283287
TU93521 other upstream 1135764 8028338 ~ 8041343 (+) True G82168
TU93312 other upstream 1838868 7335945 ~ 7338239 (+) True G81994
TU92936 other upstream 3094740 6079666 ~ 6082367 (+) True G81666
TU92951 other upstream 3117611 6056662 ~ 6056782 (+) True G81681
TU92027 other upstream 4340875 4835078 ~ 4836232 (+) True G80845
TU93966 other downstream 148172 9329329 ~ 9334948 (+) True G82581
TU95556 other downstream 420454 9601611 ~ 9602235 (+) False G84005
TU95558 other downstream 420454 9601611 ~ 9602184 (+) False G84005
TU95773 other downstream 849451 10030608 ~ 10036793 (+) False G84194
TU95794 other downstream 895297 10076454 ~ 10079336 (+) True G84215

Expression Profile