RNA id: CI01000013_10014588_10020597.mRNA


Basic Information

Item Value
RNA id CI01000013_10014588_10020597.mRNA
length 766
RNA type mRNA
GC content 0.49
exon number 4
gene id CI01000013_10014588_10020597
representative True

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 10014385 ~ 10020597 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGGGGCTGCAGTGGTGCATCAGTACAAAATCTCCTCTAGGCCCTGTTGGATCCGCCGTTCGATGGGATGGATGGGTGCTAATGGACCTTCATGCAGACCAGGGAACAAAAGCACAAGGCCTCTCCTATTATAGAGCTCGCGCTCTCTCGCAGTCTCGCGCCCTGTTGCACGCGCCTTGCTTTGACACTCGTCGTTGCCGCGGAGAGCGCGATGATGGTGCGCTCGAGATCAACAGATCTGACCATGAATCCGTTCCGAATCTCCGTGATGATGATGTTCATCTTCGCATCTGTTCATATCTCGTGCCCATCGCAGTTCCCCAGTCCGCTCATCCAGAGACACCTGTCCCTCAGTCCCACACTGGTCCACTTAAGGACACAGAGACACCACTCACCTGTGGAGGGAACAAGATACAGGTTATGCTGCAGGAGACGGAAGAAATAATGACAGGATTTGTCAAAGCATGCAAATTTAGTGGCATTAGAGACAAGTCTGACGTCTACTGGTGCCCCCTTAAAAATAGGTGTTTGGTGCCCCGGCCTAGACTCTTACATTGTTCCTAGCAGCAACTGTATAGTGTTATGGAGCTTAGACATAAGTTCTTTTAAGAAAAAAGCTTAGAGTCACAGTTCTGTTCCCTTGTCAGATGAGCGCTAATCCTCAGCCTGTAAAGGGATTAAATAGCTTATTATAGAGGAGCGCAGGGAAATCTCTGAATGGACCTTGGAAATGGAAGTGAATGAAAGCACACATTCACTGGAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96737 lncRNA downstream 139021 9875120 ~ 9875364 (-) True G84979
TU96734 lncRNA downstream 147553 9866341 ~ 9866832 (-) True G84976
TU96732 lncRNA downstream 150764 9863400 ~ 9863621 (-) True G84974
TU96720 lncRNA downstream 215709 9798472 ~ 9798676 (-) True G84962
TU96715 lncRNA downstream 228107 9786048 ~ 9786278 (-) True G84957
TU96778 lncRNA upstream 90561 10111158 ~ 10111425 (-) True G85018
TU96706 lncRNA upstream 102285 10122882 ~ 10125748 (-) True G84950
TU96799 lncRNA upstream 164514 10185111 ~ 10185345 (-) True G85039
TU96877 lncRNA upstream 374188 10394785 ~ 10395051 (-) True G85117
TU96880 lncRNA upstream 379949 10400546 ~ 10401108 (-) True G85120
CI01000013_09930834_10008344.mRNA mRNA downstream 5879 9930537 ~ 10008506 (-) True CI01000013_09930834_10008344
CI01000013_09828630_09852321.mRNA mRNA downstream 162064 9827129 ~ 9852321 (-) True CI01000013_09828630_09852321
CI01000013_09734984_09737488.mRNA mRNA downstream 276897 9734887 ~ 9737488 (-) True CI01000013_09734984_09737488
CI01000013_09444914_09445539.mRNA mRNA downstream 567832 9444425 ~ 9446553 (-) True CI01000013_09444914_09445539
CI01000013_09336832_09367107.mRNA mRNA downstream 647081 9336572 ~ 9367304 (-) True CI01000013_09336832_09367107
CI01000013_10037048_10083444.mRNA mRNA upstream 16451 10037048 ~ 10083444 (-) True CI01000013_10037048_10083444
CI01000013_10127318_10157548.mRNA mRNA upstream 106599 10127196 ~ 10157548 (-) True CI01000013_10127318_10157548
CI01000013_10218387_10244139.mRNA mRNA upstream 197773 10218370 ~ 10244139 (-) True CI01000013_10218387_10244139
CI01000013_10338616_10372320.mRNA mRNA upstream 317941 10338538 ~ 10375156 (-) True CI01000013_10338616_10372320
CI01000013_10540473_10556642.mRNA mRNA upstream 519818 10540415 ~ 10556688 (-) True CI01000013_10540473_10556642
TU95233 other downstream 691541 9307036 ~ 9322844 (-) True CI01000013_09309438_09335834
TU94655 other downstream 2632025 7380297 ~ 7382360 (-) True G83206
TU94120 other downstream 4130013 5884149 ~ 5884372 (-) True G82727
TU92796 other downstream 4270347 5739526 ~ 5744038 (-) True G81547
TU92232 other downstream 5263824 4748809 ~ 4750561 (-) True G81032
TU96930 other upstream 459264 10479861 ~ 10480700 (-) True G85170
TU96941 other upstream 542862 10572377 ~ 10572440 (-) True G85180
TU96958 other upstream 571607 10592204 ~ 10595337 (-) True G85188
TU97193 other upstream 1014435 11035032 ~ 11035466 (-) True G85401
TU97461 other upstream 1578463 11600778 ~ 11600941 (-) True G85628

Expression Profile