RNA id: TU96004



Basic Information


Item Value
RNA id TU96004
length 5565
RNA type TUCP
GC content 0.43
exon number 9
gene id CI01000013_10756927_10790192
representative False

Chromosome Information


Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 10756927 ~ 10792761 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TTTTTATTTAGCTTTGATTTGTTTCAGTACTTTCAGTACTTCAACATATTTTTTATTTCAACTTATTTATTTCAGTTAGTTGCCAAGGCAACATTTCTATTTTGAAAGTATTTGAGTTTTTCATCTAATATTTATATTTTATTTATTTTCAACTTCATTTAAATTATTGAAAACTATTTTTTAATATTTTTAGTTTTGGTTAACGGTTACAACACCAATGTGTCATTACACCAATTCAAGCCAGTGACAAGTTTGAGATTCTTTACAGATTCTTTACAAGAACTGAGGGCAAAAAGAGTAATTTGTTCGCAAATTGTTGTTCACATATCTGTATTCTTGTGATTCTTTTTGTATTATTTTGCCTTAACTAGTCTTTATCTCTCATTTCATTGATTTATATAGATTCGGGGTGGGCGATATACCGATAGACACGATTAAGCGGTAGAAATTTTAAATCGGTAGAGATTTTGGACTATTGTCTCTATGGCGTTTACACACGCATGACGTTGCTGTGCTTCATTGTCACGAAAGCTTATCGTTTGCATGCGTTTTTAAGCATTGTGGTTTAAAAACAAGTGATTTTAAACCATTGAAATGCAATATGCAGCGAAAGAGAACTCATTTTGCTATAATATGCGCACACCATCAGAGATGGTTCCAGAACCGACCATTGTGAAAATCATTTGGTTTCAGTACATTTTTAAAAATGAAACCGTTTTTCAATAAGAACCAGTTCTTAATTCCCAATCCTAGTCATATATATGGAAATAGTTTTGTGTGTGTGTGTAACTATGTTCCTTCCCTCCCCTCTTCCTTCATCTGTCCATTGTTTTCCCAGGCTCTAAAAATTCTTTAGCTCTTCAAGCCAACCCCCCCCCTCTCCACTCTCTTCCATCCTTTCTTCATTTCTATTTTCCTTTATTTTTCTTCTTTTTTTCTTATATCAAGGTCTCTACAAAGGAATGCTTGTACGCAAAGTTCTTTTAATGACATTAGCAGTAATGGTGGACATAATTGATAGTTTAGATCTTTCATATACCTTGGAAAGAGTGTATATATGGCTCTCTCCTGCTCTTTTTAAATGAAAGCAATAGTTTCAGTGAGCGCATATTCATACCACTTTCTCCACCACTCTCTTCCTTTTGAGTTTTCTTTGTGTCATTGCAGCTGATGGTTCCAGGAGTTCAGTGTGTGTACTGCAGACAGCCGTGTGTGCGCGTGATGGTGTGTAATGAGAACCAGAACCTGGTTTCTTGAGTGAATGAGGGGAAAAGAGGTGGAGGAGTTTAACAAAGCTGTAGCGCCGCATTTTTAGGAGTTACTACAGCACACATTCACAACACATCACTCTGAACTCTCCATAAACCCCGCCCACACAGGAAGTGTGTGTCCCAGAGGGAGGAGAGGCTTGGACAGGGTTTGACTCCTCCCACTCTTTCTTGCTTTCTCTCTCCATCTCTCTTGAGCCAAACAGTCTTTCTCATTCTACACATATACAGAGGAGAACTCATTGTTCCCCAGTGTTTAAGAAGGATTTTACACACATACTTTCACCATAAGCACAAAAGTGAATGAGAAAGTAAAATATCTTGGCTTGGACTTGCGTTCTGGATTCTCTTTTACTGCCTGTTCCTGTAGTTTCTGGAAGGAGTTTACAGTCTGAAGACGTTGGAGCACCATCCGTGGAATGTTTGATTGAGGTTTTGGGAATGTTGTAAAAGCGTTCTCTCATCTCCGCAGGTGTTCCAATGGAGACAATTGGAGAATCTGTACTTCAGGGAGAAGAAGTTCTCAGTGGAAGTTCATGACCCGAGAAGGTAAATCTACATTACAGCCTACACATGCTCGCTCGCACACGCAGGTCATGGACTATATAGGCTTACAGTGTCTATCACACTGACAGGACATGCTGTGGGGACCACTTTAATTCCAACCCAGCAAGAATTTTAAAGACAAGTTGGTTTAGATGTCATGACACATTTGAAAGATCTCAGTGGTTTGTGGGTCCTGTTTGTGTTTTTGTCCTTTCAGTTCCAGTGTGGGAATAATTTGAAATACTTAGAAGTATTGACATGATGTACAAACATATGTTTCAAACATAGGATATTCTACAGCATCAAGAGTAAAATAGGGTTGATTATTGTATTGAGGAACATCTTCATAAAGCATTTACATGTCAGTTTTTTGTTGTTTATTTTAAAATATGTCAGGTAAACTAATTTTCTGTCCTCTTGTTCCTGAAGCGAAACATTGTGAGGTAAATGTTCATAGTTACATCTGGTTGGCTTCCATCCACAAGCGTTCACTGAGCTAAGCTATTTGTTATTGGATTGAAATCTCTTACTTCCTGTGTCCTGTGGAGAAGAGGGTTGAAATACAACCGGAACAAATGAACAAAAACATACCCTACTCTTTCTGTCTGTCTCTCCAGATTGAGATGCGGTTTGAGTTTATTCTGATTCTCTGCTATTCTCTCTTTCTGTCAAAACTGGGGTTGTTTCAGATCTTCAGTTTATTCTGACTCTCCATCGATATTAAGATGTGTTTAGGCTTTAATCAGGCCCTCATGACATCATCAGTGCATGCTAAGAGCTGGTTAGTCTTTTAAGAGAGCAGACGCTGCCAAAAGCAGCAGCACACGCTGCCTCAGATGCTGACAGATAAACCGCCTCATTCACGCTGTTCAAACAACCACCACGACAGCCCAAAAACGATGAGAACACAGAGGGAGTTCACAGAAATGCTGGAGGCTGGGGAAATAAGACATGAAAGAGAGCAAAACAGTTTAGGAAGATGAAACAATCTGTTTATTTTGCAGCATGAGGGACTATAATGTATTTTCATTCTTGTTAGGTTCACTGTCATTCAGTTAGAGTCATTGCAACACACACACACACATACACTGATATCGTTTTGAGAAGAGTCAGAACATGAGGGTCTGCTGTTTATCTTTGTTCTAGTGGAGAGGCCTGGAGGTTTTTATAAAGCCCATCACAGGACACACACGTGCGCTGGGTTTGACCACAGTGTAAATGGTGTGTGTGTATGTGGTCTGCACTGTGTGTGGTATGTTAAGCCGATACATTGCAGGACTGTCAGGAGAACTATGTGCTAACACCAGTTTAGATTTCATATCTCCCACATAAAAATATATTATACAGGTGGCTAATAAATATAAAGCGGACAATATAGTTTAAATGGTTTTTTGGGTTTTTATGTTTATATATATATCTCTCTAGTTGTATTTAAGGCATTCAAATGTTTTGTCTTTAATATAAATTAATATAAAACTTTTATTCAGAGCTTTCATAAAAGAATCCTGAAAAACGGTTTCCACAAAAATATTAAGCAGCACAACTGTTTTCAACATTGATAATAAGAAATGTTTTTGCCATCATAGGAATAAATATTTCAAAATTGAAAACAGCTATTTTAAATTGTAGTATTGTTCCACAATATTAACATTTTAACTGTATTTTTTATCAAATAAATTTTAGGTTAAATAAGCTTTGTCTTAGTATTAGTTTTACTAACCAAGCAGCATAAGATGCTCAACAGTGTTTTTTGCCTGCTTTTACTGTGGCTTTGAGTGTAGTTCATAATTTAGAGGTAGTAACCTTTTATGACAGTGTATTTATTGAAAAGACAAACACAAAGATGTTGTGCATCTGTTAATACATAACAGTGTATTAAATGTGTTTGGACAATAATAAACATTTTACAACTGTTTCTGCACTGACAATGTCATAAAATTCAGTGAATATAAAGTCGGTTTGTGTTCGCTCCAACTGCAGGGCGTCGGTAACGCGGAGGACATTTGGTCACAGTGGCATCGCCGTGCACACCTGGTACGCCTGTCCCACCCTCATCAAATCCATCTGGGCCATGGCCATCAGCCAACACCAGTTCTACCTGGACCGCAAACAGAGTAAAAGTAAGATCCACGCAGCGCGCAGTCTGAATGAGATAGCCATAGACCTGACAGAAACAGGAACCCTCAAGACCTCCAAACTGGCCAACATGGGCAGCAAAGGCAAAATCATCAGTGGGAGCAGCGGGAGCCTACTGTCCTCAGGCTCTCAAGAGTCGGACAGCTCCCAGACCGCTAAGAAGGACATGTTGGCGGCTTTGAGGGCCAGACAGGAAGCACTGGAGGAGACACTCAGACAGAGAATAGAGGAACTCAAGAGCATCTGCATCAGAGAAGCGGAGCTAACAGGAAAACTTCCAAAAGAGTACCCTCTGGACCCCGGTGAGGAGCCGCCCACCGTCAGACGCAAAATCGGCACAGCCTTCAAATTGGATGAGCAGAAGATCCTGCCCAAAGGAGAGGAAGAGGAATTAGAGCGTTTGGAAAGAGAATTTGCCATCCAGTCTCAGATAACGGAGGCAGCACGGCGGTTAGCATCGGATCCTCACATCAACAGCAAGAAGCTGAAGAAACAGAGGAAGACATCGTATCTGAATGCTCTGAAGAAGCTGCAAGACATCGAGAACGGCATCAACGAGTACCGCGTTCGCTCCGGGAAGAAACCCACACAACGTGCCTCTCTCATCATAGAGGAAGCAAATATCGGCTCAGAGGACAGCTCCTTATCTGACGCACTGGTGCTGGATGATGATGACCCCCAGGTGGCAGGAACCCCCACGTTCTCTCCAGCTGCCTCCCCACACAAAGGTCTCCCTCCCCGACCCCCCTCCCACAGCCGGCCGCCTCCCCCCCAGTCCCTGGATGGACTGAGACACCTGCACTACCAGCGCAGTGACTACGACAAGTCCCCGATCAAACCCCGCATGTGGAGCGAAAGCTCATTAGACGAACCCTACGAGCGGGTGAAGAAACGATCCTCGCACTCCAGTAGTCACAGGCGGTTCCCCAGCACAGGCAGCTGTGAGGCAGGAGGGAGCAACTCTCTCCAGAACAGCCCGGTGCGCTCCCTTCCTCACTGGAACAGCCAGTCCAGCATGCCCTCCACCCCTGACCTGAGAACACGGAGCTACGTCCACTCAGCCAGTCTAACTCAGCCCTTCCGTGGCCGGAGTTCCAGTTTGGAGTCTCAGGGGAAGCTGCTGTCCTTGGAGGCAGACACAGAGGCAGGACTTAGCCCTGACCTCTTTCTGTCAGGACCACAGAGGACAGGAAGCAATGGCTCTGTTGTCCCCGACGACTGCTCATCTTGCACCAGCCACTCCAGCTCAGAACATTATTATCCCTCGACCACCTCTAACCCCAACTACTGTACGCTGGCCGAGGACTCGCCATCCAAAGCCCGTCAGCGGCAGCGACAGCGCCACAAGTCTGCCGGACACCTGGGTGCATCCAGTTCCGGCAGCATGCCCAATCTAGCGGCCCGTAACGGAAGCACACACGGAGGAGTGTGCGGGAGCCACCAGGGTGTGTATCTCCACAGCCAGAGCCAGCCATCCTCGCAGTACCGTATCAAAGAGTACCCGCTGTACACAGAGGGCAGCAGCCCCAATGCCGTGGTCGTCCGCAGCCTGGAAAATGACCAGGAGGGGCACTACAGCGTCAAGGCACAGTTCAAGACCTCCAACTCTTACACA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU96005 lncRNA upstream 34339 10712270 ~ 10737947 (+) True G84381
TU96032 lncRNA upstream 114709 10644446 ~ 10657577 (+) True G84386
TU96036 lncRNA upstream 128481 10633395 ~ 10643805 (+) True G84390
TU96052 lncRNA upstream 157909 10614151 ~ 10614377 (+) True G84405
TU96051 lncRNA upstream 159871 10612194 ~ 10612415 (+) True G84404
TU96025 lncRNA downstream 142 10788364 ~ 10788431 (+) False G84384
TU96026 lncRNA downstream 142 10788364 ~ 10788431 (+) True G84384
TU96027 lncRNA downstream 142 10784899 ~ 10792511 (+) False CI01000013_10756927_10790192
TU96029 lncRNA downstream 142 10784899 ~ 10792761 (+) True CI01000013_10756927_10790192
TU96058 lncRNA downstream 22552 10807309 ~ 10807963 (+) True G84410
CI01000013_10586449_10594082.mRNA mRNA upstream 177844 10585818 ~ 10594442 (+) True CI01000013_10586449_10594082
CI01000013_10502138_10525511.mRNA mRNA upstream 246612 10500690 ~ 10525674 (+) True CI01000013_10502138_10525511
CI01000013_10335904_10336688.mRNA mRNA upstream 435390 10335904 ~ 10336896 (+) True CI01000013_10335904_10336688
CI01000013_10261599_10283287.mRNA mRNA upstream 488319 10260271 ~ 10283967 (+) True CI01000013_10261599_10283287
CI01000013_09681047_09683275.mRNA mRNA upstream 1088853 9681047 ~ 9683433 (+) True CI01000013_09681047_09683275
CI01000013_10808688_10819703.mRNA mRNA downstream 23931 10808688 ~ 10819925 (+) True CI01000013_10808688_10819703
CI01000013_10821530_10827412.mRNA mRNA downstream 36773 10821530 ~ 10827977 (+) True CI01000013_10821530_10827412
CI01000013_10865753_10884937.mRNA mRNA downstream 80996 10865753 ~ 10886301 (+) True CI01000013_10865753_10884937
CI01000013_10916049_11031034.mRNA mRNA downstream 128938 10913695 ~ 11031159 (+) True CI01000013_10916049_11031034
CI01000013_11063977_11172626.mRNA mRNA downstream 279220 11063977 ~ 11172634 (+) True CI01000013_11063977_11172626
TU95833 other upstream 556324 10215127 ~ 10215962 (+) True G84250
TU95794 other upstream 692950 10076454 ~ 10079336 (+) True G84215
TU95773 other upstream 735493 10030608 ~ 10036793 (+) False G84194
TU95556 other upstream 1170051 9601611 ~ 9602235 (+) False G84005
TU95558 other upstream 1170102 9601611 ~ 9602184 (+) False G84005
TU96453 other downstream 1385232 12169989 ~ 12170818 (+) True G84768
TU96501 other downstream 1400185 12184942 ~ 12201975 (+) True G84790
TU96598 other downstream 1580292 12365049 ~ 12375905 (+) True G84864

Expression Profile