RNA id: TU88441


Basic Information

Item Value
RNA id TU88441
length 221
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G77562
representative True

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 161583 ~ 161803 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGGCAATGTCTTTATTATTTTAAACAATGTTTCTTAAAATTATTTTTACTTATTTTCCCTCCTTAATTCAAGGATGCCTATTGATGACCAGCAGAAGGAGCCAGTGTTGCATTCAAACCGCAAATCTTTTGTTCCATACTTCTTGTTTTCTTCTTCTGGTTTTTAGGAATAATAGCATCTGTCCCACTTCCTCCATATTACTAACTAGTAATGGTTAGGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88383 lncRNA upstream 25930 134702 ~ 135653 (+) True G77505
TU88419 lncRNA upstream 47146 89806 ~ 114437 (+) True G77541
TU88434 lncRNA upstream 103165 58062 ~ 58418 (+) True G77555
TU88385 lncRNA downstream 492 162295 ~ 165109 (+) True G77507
TU88412 lncRNA downstream 131355 293158 ~ 300396 (+) True G77534
TU88416 lncRNA downstream 196698 358501 ~ 359239 (+) True G77538
TU88514 lncRNA downstream 209768 371571 ~ 371944 (+) True G77635
TU88515 lncRNA downstream 210250 372053 ~ 372408 (+) True G77636
CI01000013_00151644_00152374.mRNA mRNA upstream 8487 151135 ~ 153096 (+) True CI01000013_00151644_00152374
CI01000013_00142867_00148461.mRNA mRNA upstream 12575 142867 ~ 149008 (+) True CI01000013_00142867_00148461
CI01000013_00082083_00124049.mRNA mRNA upstream 37534 82083 ~ 124049 (+) True CI01000013_00082083_00124049
CI01000013_00055395_00073103.mRNA mRNA upstream 88151 54114 ~ 73432 (+) True CI01000013_00055395_00073103
CI01000013_00259782_00293697.mRNA mRNA downstream 97979 259782 ~ 293697 (+) True CI01000013_00259782_00293697
CI01000013_00432775_00439564.mRNA mRNA downstream 270972 432775 ~ 439579 (+) True CI01000013_00432775_00439564
CI01000013_00441663_00456168.mRNA mRNA downstream 279860 441663 ~ 456456 (+) True CI01000013_00441663_00456168
CI01000013_00473761_00488628.mRNA mRNA downstream 311335 473138 ~ 488832 (+) True CI01000013_00473761_00488628
CI01000013_00490680_00491519.mRNA mRNA downstream 328813 490616 ~ 491630 (+) True CI01000013_00490680_00491519
TU88411 other downstream 547030 708833 ~ 709549 (+) True G77533
TU88574 other downstream 784718 946521 ~ 952969 (+) True G77695
TU90328 other downstream 2304962 2466765 ~ 2467171 (+) True G79309
TU91155 other downstream 3422205 3584008 ~ 3584784 (+) True G80062
TU91262 other downstream 3903130 4064933 ~ 4065829 (+) True CI01000013_04051081_04064651

Expression Profile