Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU88416 |
| length | 739 |
| lncRNA type | inter_gene |
| GC content | 0.40 |
| exon number | 1 |
| gene id | G77538 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000013 |
| NCBI id | null |
| chromosome length | 12551977 |
| location | 358501 ~ 359239 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU88412 | lncRNA | upstream | 58105 | 293158 ~ 300396 (+) | True | G77534 |
| TU88385 | lncRNA | upstream | 193392 | 162295 ~ 165109 (+) | True | G77507 |
| TU88441 | lncRNA | upstream | 196698 | 161583 ~ 161803 (+) | True | G77562 |
| TU88383 | lncRNA | upstream | 222848 | 134702 ~ 135653 (+) | True | G77505 |
| TU88419 | lncRNA | upstream | 244064 | 89806 ~ 114437 (+) | True | G77541 |
| TU88514 | lncRNA | downstream | 12332 | 371571 ~ 371944 (+) | True | G77635 |
| TU88515 | lncRNA | downstream | 12814 | 372053 ~ 372408 (+) | True | G77636 |
| TU88388 | lncRNA | downstream | 41378 | 400617 ~ 401655 (+) | True | G77510 |
| TU88397 | lncRNA | downstream | 97642 | 456881 ~ 457113 (+) | True | G77519 |
| TU88380 | lncRNA | downstream | 98086 | 457325 ~ 457873 (+) | True | G77502 |
| CI01000013_00259782_00293697.mRNA | mRNA | upstream | 64804 | 259782 ~ 293697 (+) | True | CI01000013_00259782_00293697 |
| CI01000013_00151644_00152374.mRNA | mRNA | upstream | 205405 | 151135 ~ 153096 (+) | True | CI01000013_00151644_00152374 |
| CI01000013_00142867_00148461.mRNA | mRNA | upstream | 209493 | 142867 ~ 149008 (+) | True | CI01000013_00142867_00148461 |
| CI01000013_00082083_00124049.mRNA | mRNA | upstream | 234452 | 82083 ~ 124049 (+) | True | CI01000013_00082083_00124049 |
| CI01000013_00055395_00073103.mRNA | mRNA | upstream | 285069 | 54114 ~ 73432 (+) | True | CI01000013_00055395_00073103 |
| CI01000013_00432775_00439564.mRNA | mRNA | downstream | 73536 | 432775 ~ 439579 (+) | True | CI01000013_00432775_00439564 |
| CI01000013_00441663_00456168.mRNA | mRNA | downstream | 82424 | 441663 ~ 456456 (+) | True | CI01000013_00441663_00456168 |
| CI01000013_00473761_00488628.mRNA | mRNA | downstream | 113899 | 473138 ~ 488832 (+) | True | CI01000013_00473761_00488628 |
| CI01000013_00490680_00491519.mRNA | mRNA | downstream | 131377 | 490616 ~ 491630 (+) | True | CI01000013_00490680_00491519 |
| CI01000013_00526975_00537006.mRNA | mRNA | downstream | 167736 | 526975 ~ 537074 (+) | True | CI01000013_00526975_00537006 |
| TU88411 | other | downstream | 349594 | 708833 ~ 709549 (+) | True | G77533 |
| TU88574 | other | downstream | 587282 | 946521 ~ 952969 (+) | True | G77695 |
| TU90328 | other | downstream | 2107526 | 2466765 ~ 2467171 (+) | True | G79309 |
| TU91155 | other | downstream | 3224769 | 3584008 ~ 3584784 (+) | True | G80062 |
| TU91262 | other | downstream | 3705694 | 4064933 ~ 4065829 (+) | True | CI01000013_04051081_04064651 |
