RNA id: TU88514


Basic Information

Item Value
RNA id TU88514
length 374
lncRNA type antisense_over
GC content 0.30
exon number 1
gene id G77635
representative True

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 371571 ~ 371944 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTGTGGTTTTATATTTGGAAGCAAAAAAACATCCGCAACTTTTAAAGACATTAAGCAGAGATACATTAATGTTCATAACAGGGAAAAAAAGTACAAGAGGAAGTACGAGTCATGCCGTATGAATGAAAAAAAAAAAGTAATTAGGCTGCTTGTTACAAGAAATATAATATTTGCTGCCACTGAATCATACCAAATCATTAAATTGGCAGCTCTATTAAAAACAAATGGTGTTAAAATGCTTTTTAGATATAGATTTAAACACATTGTTCACCCAAAATTATAAATTTTATCATCATTTATTTTGCCTTCATTATGTATTTCTTTCTTTTGTGGACCACAAAAGTAGATATTTAGCAGAATGTCCAAGCTGCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88416 lncRNA upstream 12332 358501 ~ 359239 (+) True G77538
TU88412 lncRNA upstream 71175 293158 ~ 300396 (+) True G77534
TU88385 lncRNA upstream 206462 162295 ~ 165109 (+) True G77507
TU88441 lncRNA upstream 209768 161583 ~ 161803 (+) True G77562
TU88383 lncRNA upstream 235918 134702 ~ 135653 (+) True G77505
TU88515 lncRNA downstream 109 372053 ~ 372408 (+) True G77636
TU88388 lncRNA downstream 28673 400617 ~ 401655 (+) True G77510
TU88397 lncRNA downstream 84937 456881 ~ 457113 (+) True G77519
TU88380 lncRNA downstream 85381 457325 ~ 457873 (+) True G77502
TU88418 lncRNA downstream 136608 508552 ~ 511252 (+) True G77540
CI01000013_00259782_00293697.mRNA mRNA upstream 77874 259782 ~ 293697 (+) True CI01000013_00259782_00293697
CI01000013_00151644_00152374.mRNA mRNA upstream 218475 151135 ~ 153096 (+) True CI01000013_00151644_00152374
CI01000013_00142867_00148461.mRNA mRNA upstream 222563 142867 ~ 149008 (+) True CI01000013_00142867_00148461
CI01000013_00082083_00124049.mRNA mRNA upstream 247522 82083 ~ 124049 (+) True CI01000013_00082083_00124049
CI01000013_00055395_00073103.mRNA mRNA upstream 298139 54114 ~ 73432 (+) True CI01000013_00055395_00073103
CI01000013_00432775_00439564.mRNA mRNA downstream 60831 432775 ~ 439579 (+) True CI01000013_00432775_00439564
CI01000013_00441663_00456168.mRNA mRNA downstream 69719 441663 ~ 456456 (+) True CI01000013_00441663_00456168
CI01000013_00473761_00488628.mRNA mRNA downstream 101194 473138 ~ 488832 (+) True CI01000013_00473761_00488628
CI01000013_00490680_00491519.mRNA mRNA downstream 118672 490616 ~ 491630 (+) True CI01000013_00490680_00491519
CI01000013_00526975_00537006.mRNA mRNA downstream 155031 526975 ~ 537074 (+) True CI01000013_00526975_00537006
TU88411 other downstream 336889 708833 ~ 709549 (+) True G77533
TU88574 other downstream 574577 946521 ~ 952969 (+) True G77695
TU90328 other downstream 2094821 2466765 ~ 2467171 (+) True G79309
TU91155 other downstream 3212064 3584008 ~ 3584784 (+) True G80062
TU91262 other downstream 3692989 4064933 ~ 4065829 (+) True CI01000013_04051081_04064651

Expression Profile