RNA id: TU88515



Basic Information


Item Value
RNA id TU88515
length 356
lncRNA type antisense_over
GC content 0.47
exon number 1
gene id G77636
representative True

Chromosome Information


Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 372053 ~ 372408 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TTCCACAGAAGAATGAGAGTCATGTGGGTTTGGAATGACATGAGGGTGAGTAAATGATGACAAAATGTTAATTTACAAGTAAAATATCTCTTTAAAATATCTAAGGGGGATGAAATGTTTTGTATCCAGGCAGTAATAACCTACATGGTCATAGACCCCAACTGATGGAGCAGTGAGTGGGTGGATGCAACTGCAGGGCAAAGGTCCGCAGATCACAAATGAGATAGAAGGGGGTGATGTAGGAGACGTAGGCCCAGATGGATGACGTCAGAGTAGTCTTGGCCTAGCAGGTCTGTCCCGCTGAGGTGTCGGGTCTGGACAGGCTCACACAGCCAACAGCCTGAGCAGCCACTGCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU88514 lncRNA upstream 109 371571 ~ 371944 (+) True G77635
TU88416 lncRNA upstream 12814 358501 ~ 359239 (+) True G77538
TU88412 lncRNA upstream 71657 293158 ~ 300396 (+) True G77534
TU88385 lncRNA upstream 206944 162295 ~ 165109 (+) True G77507
TU88441 lncRNA upstream 210250 161583 ~ 161803 (+) True G77562
TU88388 lncRNA downstream 28209 400617 ~ 401655 (+) True G77510
TU88397 lncRNA downstream 84473 456881 ~ 457113 (+) True G77519
TU88380 lncRNA downstream 84917 457325 ~ 457873 (+) True G77502
TU88418 lncRNA downstream 136144 508552 ~ 511252 (+) True G77540
TU88396 lncRNA downstream 139743 512151 ~ 512902 (+) True G77518
CI01000013_00259782_00293697.mRNA mRNA upstream 78356 259782 ~ 293697 (+) True CI01000013_00259782_00293697
CI01000013_00151644_00152374.mRNA mRNA upstream 218957 151135 ~ 153096 (+) True CI01000013_00151644_00152374
CI01000013_00142867_00148461.mRNA mRNA upstream 223045 142867 ~ 149008 (+) True CI01000013_00142867_00148461
CI01000013_00082083_00124049.mRNA mRNA upstream 248004 82083 ~ 124049 (+) True CI01000013_00082083_00124049
CI01000013_00055395_00073103.mRNA mRNA upstream 298621 54114 ~ 73432 (+) True CI01000013_00055395_00073103
CI01000013_00432775_00439564.mRNA mRNA downstream 60367 432775 ~ 439579 (+) True CI01000013_00432775_00439564
CI01000013_00441663_00456168.mRNA mRNA downstream 69255 441663 ~ 456456 (+) True CI01000013_00441663_00456168
CI01000013_00473761_00488628.mRNA mRNA downstream 100730 473138 ~ 488832 (+) True CI01000013_00473761_00488628
CI01000013_00490680_00491519.mRNA mRNA downstream 118208 490616 ~ 491630 (+) True CI01000013_00490680_00491519
CI01000013_00526975_00537006.mRNA mRNA downstream 154567 526975 ~ 537074 (+) True CI01000013_00526975_00537006
TU88411 other downstream 336425 708833 ~ 709549 (+) True G77533
TU88574 other downstream 574113 946521 ~ 952969 (+) True G77695
TU90328 other downstream 2094357 2466765 ~ 2467171 (+) True G79309
TU91155 other downstream 3211600 3584008 ~ 3584784 (+) True G80062
TU91262 other downstream 3692525 4064933 ~ 4065829 (+) True CI01000013_04051081_04064651

Expression Profile