RNA id: TU88397


Basic Information

Item Value
RNA id TU88397
length 233
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G77519
representative True

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 456881 ~ 457113 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATACCTAGTGATGGACGATTTCAAAACACTGCTTCATGAAGCTTTGAAGCTTTCAAATCAGTGGTTCGGAGTGTGTATCAAACTGCCAAAGTCACGTGATTTCAGTAAACGAGGCTTTGTTACGTCATAAGTGTTTCGAAATTTCAGTGGTTCACCACTGGGGGGGGGGAGAACCACTGATTCAAAACAAAAGATTCGTAAAGCTTCATGAAGCAGTGTTTGAAATCGCCCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88388 lncRNA upstream 55226 400617 ~ 401655 (+) True G77510
TU88515 lncRNA upstream 84473 372053 ~ 372408 (+) True G77636
TU88514 lncRNA upstream 84937 371571 ~ 371944 (+) True G77635
TU88416 lncRNA upstream 97642 358501 ~ 359239 (+) True G77538
TU88412 lncRNA upstream 156485 293158 ~ 300396 (+) True G77534
TU88380 lncRNA downstream 212 457325 ~ 457873 (+) True G77502
TU88418 lncRNA downstream 51439 508552 ~ 511252 (+) True G77540
TU88396 lncRNA downstream 55038 512151 ~ 512902 (+) True G77518
TU88384 lncRNA downstream 102639 559752 ~ 559881 (+) True G77506
TU88408 lncRNA downstream 159804 616917 ~ 634839 (+) True G77530
CI01000013_00441663_00456168.mRNA mRNA upstream 425 441663 ~ 456456 (+) True CI01000013_00441663_00456168
CI01000013_00432775_00439564.mRNA mRNA upstream 17302 432775 ~ 439579 (+) True CI01000013_00432775_00439564
CI01000013_00259782_00293697.mRNA mRNA upstream 163184 259782 ~ 293697 (+) True CI01000013_00259782_00293697
CI01000013_00151644_00152374.mRNA mRNA upstream 303785 151135 ~ 153096 (+) True CI01000013_00151644_00152374
CI01000013_00142867_00148461.mRNA mRNA upstream 307873 142867 ~ 149008 (+) True CI01000013_00142867_00148461
CI01000013_00473761_00488628.mRNA mRNA downstream 16025 473138 ~ 488832 (+) True CI01000013_00473761_00488628
CI01000013_00490680_00491519.mRNA mRNA downstream 33503 490616 ~ 491630 (+) True CI01000013_00490680_00491519
CI01000013_00526975_00537006.mRNA mRNA downstream 69862 526975 ~ 537074 (+) True CI01000013_00526975_00537006
CI01000013_00561825_00581324.mRNA mRNA downstream 103737 560850 ~ 581576 (+) False CI01000013_00561825_00581324
CI01000013_00657437_00692874.mRNA mRNA downstream 200324 657437 ~ 692874 (+) True CI01000013_00657437_00692874
TU88411 other downstream 251720 708833 ~ 709549 (+) True G77533
TU88574 other downstream 489408 946521 ~ 952969 (+) True G77695
TU90328 other downstream 2009652 2466765 ~ 2467171 (+) True G79309
TU91155 other downstream 3126895 3584008 ~ 3584784 (+) True G80062
TU91262 other downstream 3607820 4064933 ~ 4065829 (+) True CI01000013_04051081_04064651

Expression Profile