RNA id: TU88414


Basic Information

Item Value
RNA id TU88414
length 392
lncRNA type antisense_over
GC content 0.40
exon number 1
gene id G77536
representative True

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 710116 ~ 710507 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTTGAGCAGTGACAGCTTGTTCTGTGCAGCATTATTGTGTCGGTCCAGTTGCTCCTTTAGGTTGTTTTGAGGAAGACTCGGCATTGTGTGTATATTTATATGAAATTATACTCCTCAGTATATGGCATTTAATCAACTCCACAAACAAACACACGTAAATAAACACAGGAATGCTCCGTTAGAATTAATGCGACATTACAACCCTCGATTGTTTAGCACAAAAACACTCACAGCGCGACGTTTTGCTCTATTTCCGCCATCGTAAGGACTTCAAAATCACAAAACTCCTTTACAATTACCGCCACCGAAAATGAACGTTTGATATTCTGGTACAAACAAAACAATATATGCACAACACACAACGTCACCATAACACACCGCTGAAAGCTCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88406 lncRNA upstream 2861 706543 ~ 707255 (+) True G77528
TU88387 lncRNA upstream 8039 698039 ~ 702077 (+) True G77509
TU88408 lncRNA upstream 75277 616917 ~ 634839 (+) True G77530
TU88384 lncRNA upstream 149148 559752 ~ 559881 (+) True G77506
TU88396 lncRNA upstream 197214 512151 ~ 512902 (+) True G77518
TU88596 lncRNA downstream 73274 783781 ~ 784456 (+) True G77712
TU88611 lncRNA downstream 126822 837329 ~ 837561 (+) True G77724
TU88612 lncRNA downstream 127190 837697 ~ 838044 (+) True G77725
TU88616 lncRNA downstream 140923 851430 ~ 853530 (+) True G77729
TU88623 lncRNA downstream 182157 892664 ~ 892941 (+) True G77736
CI01000013_00657437_00692874.mRNA mRNA upstream 17242 657437 ~ 692874 (+) True CI01000013_00657437_00692874
CI01000013_00561825_00581324.mRNA mRNA upstream 128540 560850 ~ 581576 (+) False CI01000013_00561825_00581324
CI01000013_00526975_00537006.mRNA mRNA upstream 173042 526975 ~ 537074 (+) True CI01000013_00526975_00537006
CI01000013_00490680_00491519.mRNA mRNA upstream 218486 490616 ~ 491630 (+) True CI01000013_00490680_00491519
CI01000013_00473761_00488628.mRNA mRNA upstream 221284 473138 ~ 488832 (+) True CI01000013_00473761_00488628
CI01000013_00849127_00850710.mRNA mRNA downstream 138083 848590 ~ 850969 (+) True CI01000013_00849127_00850710
CI01000013_00862608_00869073.mRNA mRNA downstream 151911 862418 ~ 869073 (+) True CI01000013_00862608_00869073
CI01000013_00870861_00871425.mRNA mRNA downstream 160354 870861 ~ 871522 (+) True CI01000013_00870861_00871425
CI01000013_01007844_01029438.mRNA mRNA downstream 297337 1007844 ~ 1029459 (+) True CI01000013_01007844_01029438
CI01000013_01036536_01049545.mRNA mRNA downstream 326029 1036536 ~ 1049882 (+) True CI01000013_01036536_01049545
TU88411 other upstream 567 708833 ~ 709549 (+) True G77533
TU88574 other downstream 236014 946521 ~ 952969 (+) True G77695
TU90328 other downstream 1756258 2466765 ~ 2467171 (+) True G79309
TU91155 other downstream 2873501 3584008 ~ 3584784 (+) True G80062
TU91262 other downstream 3354426 4064933 ~ 4065829 (+) True CI01000013_04051081_04064651
TU92027 other downstream 4124571 4835078 ~ 4836232 (+) True G80845

Expression Profile