RNA id: TU88611


Basic Information

Item Value
RNA id TU88611
length 233
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G77724
representative True

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 837329 ~ 837561 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTACAGTGATAACAGGAACATAATTTGGGCTGTACAACAGCTCTAGACAAAAATAGTGTCATTGTCCAGCTTAAGAAGTTCAGTATTGATTCATTTCCGTTGTAAAAATCATTAGTTATTAATTTAGTTCATTTATCTATACAGTCATGTCATCATCCAGCTCAGTTCAGTTCTCATATAATGGTGTCAATGCAGGCAGATCAGTAATATTGTTGAGTGTTAAATATCCCCG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88596 lncRNA upstream 52873 783781 ~ 784456 (+) True G77712
TU88414 lncRNA upstream 126822 710116 ~ 710507 (+) True G77536
TU88406 lncRNA upstream 130074 706543 ~ 707255 (+) True G77528
TU88387 lncRNA upstream 135252 698039 ~ 702077 (+) True G77509
TU88408 lncRNA upstream 202490 616917 ~ 634839 (+) True G77530
TU88612 lncRNA downstream 136 837697 ~ 838044 (+) True G77725
TU88616 lncRNA downstream 13869 851430 ~ 853530 (+) True G77729
TU88623 lncRNA downstream 55103 892664 ~ 892941 (+) True G77736
TU88626 lncRNA downstream 60189 897750 ~ 897950 (+) True G77739
TU88634 lncRNA downstream 71036 908597 ~ 908910 (+) True G77747
CI01000013_00657437_00692874.mRNA mRNA upstream 144455 657437 ~ 692874 (+) True CI01000013_00657437_00692874
CI01000013_00561825_00581324.mRNA mRNA upstream 255753 560850 ~ 581576 (+) False CI01000013_00561825_00581324
CI01000013_00526975_00537006.mRNA mRNA upstream 300255 526975 ~ 537074 (+) True CI01000013_00526975_00537006
CI01000013_00490680_00491519.mRNA mRNA upstream 345699 490616 ~ 491630 (+) True CI01000013_00490680_00491519
CI01000013_00473761_00488628.mRNA mRNA upstream 348497 473138 ~ 488832 (+) True CI01000013_00473761_00488628
CI01000013_00849127_00850710.mRNA mRNA downstream 11029 848590 ~ 850969 (+) True CI01000013_00849127_00850710
CI01000013_00862608_00869073.mRNA mRNA downstream 24857 862418 ~ 869073 (+) True CI01000013_00862608_00869073
CI01000013_00870861_00871425.mRNA mRNA downstream 33300 870861 ~ 871522 (+) True CI01000013_00870861_00871425
CI01000013_01007844_01029438.mRNA mRNA downstream 170283 1007844 ~ 1029459 (+) True CI01000013_01007844_01029438
CI01000013_01036536_01049545.mRNA mRNA downstream 198975 1036536 ~ 1049882 (+) True CI01000013_01036536_01049545
TU88411 other upstream 127780 708833 ~ 709549 (+) True G77533
TU88574 other downstream 108960 946521 ~ 952969 (+) True G77695
TU90328 other downstream 1629204 2466765 ~ 2467171 (+) True G79309
TU91155 other downstream 2746447 3584008 ~ 3584784 (+) True G80062
TU91262 other downstream 3227372 4064933 ~ 4065829 (+) True CI01000013_04051081_04064651
TU92027 other downstream 3997517 4835078 ~ 4836232 (+) True G80845

Expression Profile