Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU88616 |
| length | 2101 |
| lncRNA type | inter_gene |
| GC content | 0.34 |
| exon number | 1 |
| gene id | G77729 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000013 |
| NCBI id | null |
| chromosome length | 12551977 |
| location | 851430 ~ 853530 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU88612 | lncRNA | upstream | 13386 | 837697 ~ 838044 (+) | True | G77725 |
| TU88611 | lncRNA | upstream | 13869 | 837329 ~ 837561 (+) | True | G77724 |
| TU88596 | lncRNA | upstream | 66974 | 783781 ~ 784456 (+) | True | G77712 |
| TU88414 | lncRNA | upstream | 140923 | 710116 ~ 710507 (+) | True | G77536 |
| TU88406 | lncRNA | upstream | 144175 | 706543 ~ 707255 (+) | True | G77528 |
| TU88623 | lncRNA | downstream | 39134 | 892664 ~ 892941 (+) | True | G77736 |
| TU88626 | lncRNA | downstream | 44220 | 897750 ~ 897950 (+) | True | G77739 |
| TU88634 | lncRNA | downstream | 55067 | 908597 ~ 908910 (+) | True | G77747 |
| TU88653 | lncRNA | downstream | 83719 | 937249 ~ 937457 (+) | True | G77765 |
| TU88690 | lncRNA | downstream | 219972 | 1073502 ~ 1073829 (+) | True | G77800 |
| CI01000013_00849127_00850710.mRNA | mRNA | upstream | 461 | 848590 ~ 850969 (+) | True | CI01000013_00849127_00850710 |
| CI01000013_00657437_00692874.mRNA | mRNA | upstream | 158556 | 657437 ~ 692874 (+) | True | CI01000013_00657437_00692874 |
| CI01000013_00561825_00581324.mRNA | mRNA | upstream | 269854 | 560850 ~ 581576 (+) | False | CI01000013_00561825_00581324 |
| CI01000013_00526975_00537006.mRNA | mRNA | upstream | 314356 | 526975 ~ 537074 (+) | True | CI01000013_00526975_00537006 |
| CI01000013_00490680_00491519.mRNA | mRNA | upstream | 359800 | 490616 ~ 491630 (+) | True | CI01000013_00490680_00491519 |
| CI01000013_00862608_00869073.mRNA | mRNA | downstream | 8888 | 862418 ~ 869073 (+) | True | CI01000013_00862608_00869073 |
| CI01000013_00870861_00871425.mRNA | mRNA | downstream | 17331 | 870861 ~ 871522 (+) | True | CI01000013_00870861_00871425 |
| CI01000013_01007844_01029438.mRNA | mRNA | downstream | 154314 | 1007844 ~ 1029459 (+) | True | CI01000013_01007844_01029438 |
| CI01000013_01036536_01049545.mRNA | mRNA | downstream | 183006 | 1036536 ~ 1049882 (+) | True | CI01000013_01036536_01049545 |
| CI01000013_01115756_01164524.mRNA | mRNA | downstream | 262226 | 1115756 ~ 1164524 (+) | False | CI01000013_01115756_01164524 |
| TU88411 | other | upstream | 141881 | 708833 ~ 709549 (+) | True | G77533 |
| TU88574 | other | downstream | 92991 | 946521 ~ 952969 (+) | True | G77695 |
| TU90328 | other | downstream | 1613235 | 2466765 ~ 2467171 (+) | True | G79309 |
| TU91155 | other | downstream | 2730478 | 3584008 ~ 3584784 (+) | True | G80062 |
| TU91262 | other | downstream | 3211403 | 4064933 ~ 4065829 (+) | True | CI01000013_04051081_04064651 |
| TU92027 | other | downstream | 3981548 | 4835078 ~ 4836232 (+) | True | G80845 |
