RNA id: TU88623


Basic Information

Item Value
RNA id TU88623
length 252
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G77736
representative True

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 892664 ~ 892941 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTGCTGCACTGACGAGAATGTCTCCCAAGCGTTTTAGGTGTTCTGTAGCTGGATGGATTAATCCACATAGCTCTCTCCATTTACTCCCTAAATCTGAGCCGCTGAAGACGAGGTGGATTAATTTTGTTTTCGAAGAAAATGCTCCCTCAACTCTACCGAAATTCGTTTATGTCTGCGCGAATCATTTCACAATACAAAGGGACAATACAAAACAGAGGTTGTGCTAAAAATTTGTTACTCAAGGATAGATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88616 lncRNA upstream 39134 851430 ~ 853530 (+) True G77729
TU88612 lncRNA upstream 54620 837697 ~ 838044 (+) True G77725
TU88611 lncRNA upstream 55103 837329 ~ 837561 (+) True G77724
TU88596 lncRNA upstream 108208 783781 ~ 784456 (+) True G77712
TU88414 lncRNA upstream 182157 710116 ~ 710507 (+) True G77536
TU88626 lncRNA downstream 4809 897750 ~ 897950 (+) True G77739
TU88634 lncRNA downstream 15656 908597 ~ 908910 (+) True G77747
TU88653 lncRNA downstream 44308 937249 ~ 937457 (+) True G77765
TU88690 lncRNA downstream 180561 1073502 ~ 1073829 (+) True G77800
TU88698 lncRNA downstream 267835 1160776 ~ 1166617 (+) True CI01000013_01115756_01164524
CI01000013_00870861_00871425.mRNA mRNA upstream 21142 870861 ~ 871522 (+) True CI01000013_00870861_00871425
CI01000013_00862608_00869073.mRNA mRNA upstream 23591 862418 ~ 869073 (+) True CI01000013_00862608_00869073
CI01000013_00849127_00850710.mRNA mRNA upstream 41695 848590 ~ 850969 (+) True CI01000013_00849127_00850710
CI01000013_00657437_00692874.mRNA mRNA upstream 199790 657437 ~ 692874 (+) True CI01000013_00657437_00692874
CI01000013_00561825_00581324.mRNA mRNA upstream 311088 560850 ~ 581576 (+) False CI01000013_00561825_00581324
CI01000013_01007844_01029438.mRNA mRNA downstream 114903 1007844 ~ 1029459 (+) True CI01000013_01007844_01029438
CI01000013_01036536_01049545.mRNA mRNA downstream 143595 1036536 ~ 1049882 (+) True CI01000013_01036536_01049545
CI01000013_01115756_01164524.mRNA mRNA downstream 222815 1115756 ~ 1164524 (+) False CI01000013_01115756_01164524
CI01000013_01220794_01229752.mRNA mRNA downstream 327853 1220794 ~ 1230958 (+) True CI01000013_01220794_01229752
CI01000013_01275415_01295230.mRNA mRNA downstream 382181 1275122 ~ 1295324 (+) True CI01000013_01275415_01295230
TU88411 other upstream 183115 708833 ~ 709549 (+) True G77533
TU88574 other downstream 53580 946521 ~ 952969 (+) True G77695
TU90328 other downstream 1573824 2466765 ~ 2467171 (+) True G79309
TU91155 other downstream 2691067 3584008 ~ 3584784 (+) True G80062
TU91262 other downstream 3171992 4064933 ~ 4065829 (+) True CI01000013_04051081_04064651
TU92027 other downstream 3942137 4835078 ~ 4836232 (+) True G80845

Expression Profile