RNA id: TU88626


Basic Information

Item Value
RNA id TU88626
length 201
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G77739
representative True

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 897750 ~ 897950 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGATCGAAAGCCTATGCATTTTTCCCACAGACTTTTGGAAAATCGCAAAAAAATAAGCTCTGTGTTTAACAAAGGGTTATGACACTTACACGTTTTGTCTATCAAGATAATCTTTACAAGTTAACACAACATTTATACATTATTAAGCCTAAATAAAGTAATCAGATATAAAAAGATAACAGTTGGCTATAAACGGACTAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88623 lncRNA upstream 4809 892664 ~ 892941 (+) True G77736
TU88616 lncRNA upstream 44220 851430 ~ 853530 (+) True G77729
TU88612 lncRNA upstream 59706 837697 ~ 838044 (+) True G77725
TU88611 lncRNA upstream 60189 837329 ~ 837561 (+) True G77724
TU88596 lncRNA upstream 113294 783781 ~ 784456 (+) True G77712
TU88634 lncRNA downstream 10647 908597 ~ 908910 (+) True G77747
TU88653 lncRNA downstream 39299 937249 ~ 937457 (+) True G77765
TU88690 lncRNA downstream 175552 1073502 ~ 1073829 (+) True G77800
TU88698 lncRNA downstream 262826 1160776 ~ 1166617 (+) True CI01000013_01115756_01164524
TU88716 lncRNA downstream 283252 1181202 ~ 1181428 (+) True G77826
CI01000013_00870861_00871425.mRNA mRNA upstream 26228 870861 ~ 871522 (+) True CI01000013_00870861_00871425
CI01000013_00862608_00869073.mRNA mRNA upstream 28677 862418 ~ 869073 (+) True CI01000013_00862608_00869073
CI01000013_00849127_00850710.mRNA mRNA upstream 46781 848590 ~ 850969 (+) True CI01000013_00849127_00850710
CI01000013_00657437_00692874.mRNA mRNA upstream 204876 657437 ~ 692874 (+) True CI01000013_00657437_00692874
CI01000013_00561825_00581324.mRNA mRNA upstream 316174 560850 ~ 581576 (+) False CI01000013_00561825_00581324
CI01000013_01007844_01029438.mRNA mRNA downstream 109894 1007844 ~ 1029459 (+) True CI01000013_01007844_01029438
CI01000013_01036536_01049545.mRNA mRNA downstream 138586 1036536 ~ 1049882 (+) True CI01000013_01036536_01049545
CI01000013_01115756_01164524.mRNA mRNA downstream 217806 1115756 ~ 1164524 (+) False CI01000013_01115756_01164524
CI01000013_01220794_01229752.mRNA mRNA downstream 322844 1220794 ~ 1230958 (+) True CI01000013_01220794_01229752
CI01000013_01275415_01295230.mRNA mRNA downstream 377172 1275122 ~ 1295324 (+) True CI01000013_01275415_01295230
TU88411 other upstream 188201 708833 ~ 709549 (+) True G77533
TU88574 other downstream 48571 946521 ~ 952969 (+) True G77695
TU90328 other downstream 1568815 2466765 ~ 2467171 (+) True G79309
TU91155 other downstream 2686058 3584008 ~ 3584784 (+) True G80062
TU91262 other downstream 3166983 4064933 ~ 4065829 (+) True CI01000013_04051081_04064651
TU92027 other downstream 3937128 4835078 ~ 4836232 (+) True G80845

Expression Profile