RNA id: TU88634


Basic Information

Item Value
RNA id TU88634
length 314
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G77747
representative True

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 908597 ~ 908910 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGCAGGAGCACGGCGTGTTTTTGCTCACACCCAAATAGGGGCAAATTTGACAAGCTATAGTAAATGATCTGTGGGATATTTTGAGCTGAAACTTCACAGACACATTCTGGGGACACCAGAGACTTATATTACATCTTATAAAAGGGACATTATAGGTCCCCTTTAAATCATTTCTTTAATTCCTTTAAATAAAAATGTCCATTTCAAGGGTCCCCCAAATGTTCAAGACACCTTGGTTTAAATAAGGCAGTGCAGGCTTTTTAGTGCAATTTTAGCTGATTTTGATGTAGTGTTTTGAGCTGTTCAATGTCAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88626 lncRNA upstream 10647 897750 ~ 897950 (+) True G77739
TU88623 lncRNA upstream 15656 892664 ~ 892941 (+) True G77736
TU88616 lncRNA upstream 55067 851430 ~ 853530 (+) True G77729
TU88612 lncRNA upstream 70553 837697 ~ 838044 (+) True G77725
TU88611 lncRNA upstream 71036 837329 ~ 837561 (+) True G77724
TU88653 lncRNA downstream 28339 937249 ~ 937457 (+) True G77765
TU88690 lncRNA downstream 164592 1073502 ~ 1073829 (+) True G77800
TU88698 lncRNA downstream 251866 1160776 ~ 1166617 (+) True CI01000013_01115756_01164524
TU88716 lncRNA downstream 272292 1181202 ~ 1181428 (+) True G77826
TU88719 lncRNA downstream 277999 1186909 ~ 1187191 (+) True G77829
CI01000013_00870861_00871425.mRNA mRNA upstream 37075 870861 ~ 871522 (+) True CI01000013_00870861_00871425
CI01000013_00862608_00869073.mRNA mRNA upstream 39524 862418 ~ 869073 (+) True CI01000013_00862608_00869073
CI01000013_00849127_00850710.mRNA mRNA upstream 57628 848590 ~ 850969 (+) True CI01000013_00849127_00850710
CI01000013_00657437_00692874.mRNA mRNA upstream 215723 657437 ~ 692874 (+) True CI01000013_00657437_00692874
CI01000013_00561825_00581324.mRNA mRNA upstream 327021 560850 ~ 581576 (+) False CI01000013_00561825_00581324
CI01000013_01007844_01029438.mRNA mRNA downstream 98934 1007844 ~ 1029459 (+) True CI01000013_01007844_01029438
CI01000013_01036536_01049545.mRNA mRNA downstream 127626 1036536 ~ 1049882 (+) True CI01000013_01036536_01049545
CI01000013_01115756_01164524.mRNA mRNA downstream 206846 1115756 ~ 1164524 (+) False CI01000013_01115756_01164524
CI01000013_01220794_01229752.mRNA mRNA downstream 311884 1220794 ~ 1230958 (+) True CI01000013_01220794_01229752
CI01000013_01275415_01295230.mRNA mRNA downstream 366212 1275122 ~ 1295324 (+) True CI01000013_01275415_01295230
TU88411 other upstream 199048 708833 ~ 709549 (+) True G77533
TU88574 other downstream 37611 946521 ~ 952969 (+) True G77695
TU90328 other downstream 1557855 2466765 ~ 2467171 (+) True G79309
TU91155 other downstream 2675098 3584008 ~ 3584784 (+) True G80062
TU91262 other downstream 3156023 4064933 ~ 4065829 (+) True CI01000013_04051081_04064651
TU92027 other downstream 3926168 4835078 ~ 4836232 (+) True G80845

Expression Profile