RNA id: TU88653


Basic Information

Item Value
RNA id TU88653
length 209
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G77765
representative True

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 937249 ~ 937457 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTCCTACATCACTAGGGGAGCCAAATCTGAGCGGCTCATTTTTTCACATGCTTGCAGAGAAAGGCTTACCAAAAAAAGTTTTCCTTTTTCACGTTTTCTGGGTTGGTAGATGCACTGGGGACCCGATTATAACACTTAAACAAGGAAAAAGTCAGATTTTCATAATATGTCCCCTTTAATTTTATTATTGACCTGACTCAAGTCTCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88634 lncRNA upstream 28339 908597 ~ 908910 (+) True G77747
TU88626 lncRNA upstream 39299 897750 ~ 897950 (+) True G77739
TU88623 lncRNA upstream 44308 892664 ~ 892941 (+) True G77736
TU88616 lncRNA upstream 83719 851430 ~ 853530 (+) True G77729
TU88612 lncRNA upstream 99205 837697 ~ 838044 (+) True G77725
TU88690 lncRNA downstream 136045 1073502 ~ 1073829 (+) True G77800
TU88698 lncRNA downstream 223319 1160776 ~ 1166617 (+) True CI01000013_01115756_01164524
TU88716 lncRNA downstream 243745 1181202 ~ 1181428 (+) True G77826
TU88719 lncRNA downstream 249452 1186909 ~ 1187191 (+) True G77829
TU88799 lncRNA downstream 379794 1317251 ~ 1317663 (+) True G77894
CI01000013_00870861_00871425.mRNA mRNA upstream 65727 870861 ~ 871522 (+) True CI01000013_00870861_00871425
CI01000013_00862608_00869073.mRNA mRNA upstream 68176 862418 ~ 869073 (+) True CI01000013_00862608_00869073
CI01000013_00849127_00850710.mRNA mRNA upstream 86280 848590 ~ 850969 (+) True CI01000013_00849127_00850710
CI01000013_00657437_00692874.mRNA mRNA upstream 244375 657437 ~ 692874 (+) True CI01000013_00657437_00692874
CI01000013_00561825_00581324.mRNA mRNA upstream 355673 560850 ~ 581576 (+) False CI01000013_00561825_00581324
CI01000013_01007844_01029438.mRNA mRNA downstream 70387 1007844 ~ 1029459 (+) True CI01000013_01007844_01029438
CI01000013_01036536_01049545.mRNA mRNA downstream 99079 1036536 ~ 1049882 (+) True CI01000013_01036536_01049545
CI01000013_01115756_01164524.mRNA mRNA downstream 178299 1115756 ~ 1164524 (+) False CI01000013_01115756_01164524
CI01000013_01220794_01229752.mRNA mRNA downstream 283337 1220794 ~ 1230958 (+) True CI01000013_01220794_01229752
CI01000013_01275415_01295230.mRNA mRNA downstream 337665 1275122 ~ 1295324 (+) True CI01000013_01275415_01295230
TU88411 other upstream 227700 708833 ~ 709549 (+) True G77533
TU88574 other downstream 9064 946521 ~ 952969 (+) True G77695
TU90328 other downstream 1529308 2466765 ~ 2467171 (+) True G79309
TU91155 other downstream 2646551 3584008 ~ 3584784 (+) True G80062
TU91262 other downstream 3127476 4064933 ~ 4065829 (+) True CI01000013_04051081_04064651
TU92027 other downstream 3897621 4835078 ~ 4836232 (+) True G80845

Expression Profile