RNA id: TU88690


Basic Information

Item Value
RNA id TU88690
length 269
lncRNA type intronic
GC content 0.40
exon number 2
gene id G77800
representative True

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 1073502 ~ 1073829 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAGAAAGAGATCGAGCATTTCAGATTTAGCATTTTCCTTCAGGTCAGTCCTATGTTCATAATAAAAAATCTGTTTAAATGTTCAATGTATTATCTCGTCCTTTTAACAGTTAAGGGGTTTTCCCGTGACTGACAGCGCTAGTCAAAGCATTTGTCAGTTGCCTCTTGTTCCGTGTTCATAAAGACAGTCTTTGCCGCCATCTAATGGTGTAATAATGTAACTTCTGTTGCTGTTCACGGTCAGGGACTATTTTTTCCGGCGGAAGGAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88653 lncRNA upstream 136045 937249 ~ 937457 (+) True G77765
TU88634 lncRNA upstream 164592 908597 ~ 908910 (+) True G77747
TU88626 lncRNA upstream 175552 897750 ~ 897950 (+) True G77739
TU88623 lncRNA upstream 180561 892664 ~ 892941 (+) True G77736
TU88616 lncRNA upstream 219972 851430 ~ 853530 (+) True G77729
TU88698 lncRNA downstream 86947 1160776 ~ 1166617 (+) True CI01000013_01115756_01164524
TU88716 lncRNA downstream 107373 1181202 ~ 1181428 (+) True G77826
TU88719 lncRNA downstream 113080 1186909 ~ 1187191 (+) True G77829
TU88799 lncRNA downstream 243422 1317251 ~ 1317663 (+) True G77894
TU88800 lncRNA downstream 243892 1317721 ~ 1317963 (+) True G77895
CI01000013_01036536_01049545.mRNA mRNA upstream 23620 1036536 ~ 1049882 (+) True CI01000013_01036536_01049545
CI01000013_01007844_01029438.mRNA mRNA upstream 44043 1007844 ~ 1029459 (+) True CI01000013_01007844_01029438
CI01000013_00870861_00871425.mRNA mRNA upstream 201980 870861 ~ 871522 (+) True CI01000013_00870861_00871425
CI01000013_00862608_00869073.mRNA mRNA upstream 204429 862418 ~ 869073 (+) True CI01000013_00862608_00869073
CI01000013_00849127_00850710.mRNA mRNA upstream 222533 848590 ~ 850969 (+) True CI01000013_00849127_00850710
CI01000013_01115756_01164524.mRNA mRNA downstream 41927 1115756 ~ 1164524 (+) False CI01000013_01115756_01164524
CI01000013_01220794_01229752.mRNA mRNA downstream 146965 1220794 ~ 1230958 (+) True CI01000013_01220794_01229752
CI01000013_01275415_01295230.mRNA mRNA downstream 201293 1275122 ~ 1295324 (+) True CI01000013_01275415_01295230
CI01000013_01335438_01381270.mRNA mRNA downstream 261609 1335438 ~ 1381270 (+) True CI01000013_01335438_01381270
CI01000013_01405290_01429838.mRNA mRNA downstream 331461 1405290 ~ 1430313 (+) False CI01000013_01405290_01429838
TU88574 other upstream 120533 946521 ~ 952969 (+) True G77695
TU88411 other upstream 363953 708833 ~ 709549 (+) True G77533
TU90328 other downstream 1392936 2466765 ~ 2467171 (+) True G79309
TU91155 other downstream 2510179 3584008 ~ 3584784 (+) True G80062
TU91262 other downstream 2991104 4064933 ~ 4065829 (+) True CI01000013_04051081_04064651
TU92027 other downstream 3761249 4835078 ~ 4836232 (+) True G80845
TU92951 other downstream 4982469 6056662 ~ 6056782 (+) True G81681

Expression Profile