RNA id: TU88719


Basic Information

Item Value
RNA id TU88719
length 283
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G77829
representative True

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 1186909 ~ 1187191 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAGCGATCAACTTGAAGCTTTCACCTGCACACCCACTGAAGCTAAACAGAGTTGAGCCCAGTTTCTATTTGGATGGGAGACCTCCTTGAAGCTTGGGTAGCTGCAGGAAGAGGTGTTAGAGAGGCCAGTGGTCTGATCAACCTGTGGCCTGAGTGGGTCCTAATGCCCCAGTGCAGTCGCAATAAGCTGTACTGTATAAAGGGTGTAAAATAATCCATACAGCACATCACATTCTGCCCAACGCCCCAGTACAGTCGCCATAAACTGTACTGAATAAAGGGTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88716 lncRNA upstream 5481 1181202 ~ 1181428 (+) True G77826
TU88698 lncRNA upstream 20292 1160776 ~ 1166617 (+) True CI01000013_01115756_01164524
TU88690 lncRNA upstream 113080 1073502 ~ 1073829 (+) True G77800
TU88653 lncRNA upstream 249452 937249 ~ 937457 (+) True G77765
TU88634 lncRNA upstream 277999 908597 ~ 908910 (+) True G77747
TU88799 lncRNA downstream 130060 1317251 ~ 1317663 (+) True G77894
TU88800 lncRNA downstream 130530 1317721 ~ 1317963 (+) True G77895
TU88764 lncRNA downstream 226600 1413791 ~ 1437922 (+) False G77860
TU88762 lncRNA downstream 242497 1431326 ~ 1437922 (+) False G77860
TU88763 lncRNA downstream 242524 1431326 ~ 1437922 (+) True G77860
CI01000013_01115756_01164524.mRNA mRNA upstream 22385 1115756 ~ 1164524 (+) False CI01000013_01115756_01164524
CI01000013_01036536_01049545.mRNA mRNA upstream 137027 1036536 ~ 1049882 (+) True CI01000013_01036536_01049545
CI01000013_01007844_01029438.mRNA mRNA upstream 157450 1007844 ~ 1029459 (+) True CI01000013_01007844_01029438
CI01000013_00870861_00871425.mRNA mRNA upstream 315387 870861 ~ 871522 (+) True CI01000013_00870861_00871425
CI01000013_00862608_00869073.mRNA mRNA upstream 317836 862418 ~ 869073 (+) True CI01000013_00862608_00869073
CI01000013_01220794_01229752.mRNA mRNA downstream 33603 1220794 ~ 1230958 (+) True CI01000013_01220794_01229752
CI01000013_01275415_01295230.mRNA mRNA downstream 87931 1275122 ~ 1295324 (+) True CI01000013_01275415_01295230
CI01000013_01335438_01381270.mRNA mRNA downstream 148247 1335438 ~ 1381270 (+) True CI01000013_01335438_01381270
CI01000013_01405290_01429838.mRNA mRNA downstream 218099 1405290 ~ 1430313 (+) False CI01000013_01405290_01429838
CI01000013_01443540_01469011.mRNA mRNA downstream 256349 1443540 ~ 1469076 (+) True CI01000013_01443540_01469011
TU88574 other upstream 233940 946521 ~ 952969 (+) True G77695
TU88411 other upstream 477360 708833 ~ 709549 (+) True G77533
TU90328 other downstream 1279574 2466765 ~ 2467171 (+) True G79309
TU91155 other downstream 2396817 3584008 ~ 3584784 (+) True G80062
TU91262 other downstream 2877742 4064933 ~ 4065829 (+) True CI01000013_04051081_04064651
TU92027 other downstream 3647887 4835078 ~ 4836232 (+) True G80845
TU92951 other downstream 4869107 6056662 ~ 6056782 (+) True G81681

Expression Profile